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CandidaDB specifications

Information


Unique identifier OMICS_03099
Name CandidaDB
Restrictions to use None
Maintained Yes

Taxon


  • Plants and Fungi
    • Candida albicans

Maintainer


  • person_outline Christophe d’Enfert

Publications for CandidaDB

CandidaDB citations

 (4)
library_books

Identification of sumoylation targets, combined with inactivation of SMT3, reveals the impact of sumoylation upon growth, morphology, and stress resistance in the pathogen Candida albicans

2011
Mol Biol Cell
PMCID: 3046064
PMID: 21209325
DOI: 10.1091/mbc.E10-07-0632

[…] arches using Mascot Server version 2.2 (Matrix Science, London, UK). Our in-house protein sequence database (containing 6166 sequences) was built from the flat file CALBI_prot.txt downloaded from the CandidaDB web server ftp://ftp.pasteur.fr/pub/GenomeDB/CandidaDB/FlatFiles. Protein annotations were taken from the Candida Genome Database (candidagenome.org) and CandidaDB (http://genolist.pasteur.f […]

library_books

Molecular and proteomic analyses highlight the importance of ubiquitination for the stress resistance, metabolic adaptation, morphogenetic regulation and virulence of Candida albicans

2011
Mol Microbiol
PMCID: 3084552
PMID: 21269335
DOI: 10.1111/j.1365-2958.2011.07542.x

[…] ondon, UK). Our in-house protein sequence database (containing 6166 sequences) was built from the flat file downloaded from the CandidaDB web server ftp://ftp.pasteur.fr/pub/GenomeDB/CandidaDB/FlatFiles. Protein annotations were taken from the Candida Genome Database (http://www.candidagenome.org/) and CandidaDB (http://genolist.pasteur.fr/CandidaDB/). Potential ubiquitination sit […]

library_books

Processing of predicted substrates of fungal Kex2 proteinases from Candida albicans, C. glabrata, Saccharomyces cerevisiae and Pichia pastoris

2008
BMC Microbiol
PMCID: 2515848
PMID: 18625069
DOI: 10.1186/1471-2180-8-116

[…] The protein sequence sets analysed here were downloaded from the Genolevures Website [,], from CandidaDB [,] and from the Stanford Genomic Resources FTP server []. Sequence analysis on genome-scale was done using custom perl scripts within the bioperl framework, incorporated into a local databa […]

library_books

CandidaDB: a genome database for Candida albicans pathogenomics

2004
Nucleic Acids Res
PMCID: 540078
PMID: 15608215
DOI: 10.1093/nar/gki124

[…] d 19 of the C.albicans strain SC5314 genome sequence were retrieved from the Stanford Genome Technology Center (SGTC) website (http://www-sequence.stanford.edu/group/candida/). The current release of CandidaDB is based on Assembly 19, composed of a haploid supercontig set (contigs 19-831–19-10 262), here referred to as the haploid set, and an allelic supercontig set (contigs 19-20001–19-20 161), h […]

Citations

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CandidaDB institution(s)
Unité Biologie et Pathogénicité Fongiques, INRA USC2019, Institut Pasteur, Paris, France

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