Protocols

CanDrA specifications

Information


Unique identifier OMICS_05373
Name CanDrA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Ken Chen

Publication for CanDrA

CanDrA citation

call_split

Notch pathway activation is essential for maintenance of stem like cells in early tongue cancer

2016
Oncotarget
PMCID: 5226594
PMID: 27391340
DOI: 10.18632/oncotarget.10419
call_split See protocol

[…] ed analysis for somatic non-synonymous variants using nine different tools such as: dbNSFP v2.0 (includes SIFT, Polyphen2_HDIV, Polyphen2_HVAR, LRT, Mutation Taster, Mutation Accessor and FATHMM) [], CanDRA v1.0 [] and Provean v.1.1 []. Variants called deleterious in nature by at least one software was taken for further analysis. We confirmed the identity of mutations by manual visualization in IG […]

CanDrA institution(s)
Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA
CanDrA funding source(s)
This work was supported in part by the National Institutes of Health [grant number 1R01CA172652, CA168394, CA083639, CA143883, UL1TR000371 and 1U01CA180964]; the MD Anderson Cancer Center Sheikh Khalifa Ben Zayed Al Nahyan Institute of Personalized Cancer Therapy and the National Cancer Institute Cancer Center Support Grant [P30 CA016672].

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