CANGS protocols

CANGS specifications

Information


Unique identifier OMICS_01084
Name CANGS
Alternative name Cleaning and Analyzing Next Generation Sequences
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Roche
Operating system Unix/Linux, Mac OS
Programming languages Perl
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.1
Stability Stable
Requirements BioPerl, BLAST, MAFFT, MOTHUR, Analytic Rarefaction
Maintained Yes

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Documentation


Maintainer


  • person_outline Christian Schlotterer <>

Publication for Cleaning and Analyzing Next Generation Sequences

CANGS IN pipeline

2012
PMCID: 3531709
PMID: 23293637
DOI: 10.3389/fimmu.2012.00386

[…] et al., 2008). in other studies, all sequences with any type of indel are excluded from analysis (boyd et al., 2010; wu et al., 2010) or included without accounting for indels (wu et al., 2010). cangs (pandey et al., 2010) identifies indels that appear only in hpts near the primers and discards them. the program does not identify indels occurring far from the primers. varscan (koboldt et […]

CANGS institution(s)
Institut für Populationsgenetik, Veterinärmedizinische Universität Wien, Vienna, Austria

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