CANGS statistics

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Citations per year

Number of citations per year for the bioinformatics software tool CANGS
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Tool usage distribution map

This map represents all the scientific publications referring to CANGS per scientific context
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Associated diseases

This word cloud represents CANGS usage per disease context
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Protocols

CANGS specifications

Information


Unique identifier OMICS_01084
Name CANGS
Alternative name Cleaning and Analyzing Next Generation Sequences
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Roche
Operating system Unix/Linux, Mac OS
Programming languages Perl
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.1
Stability Stable
Requirements
BioPerl, BLAST, MAFFT, MOTHUR, Analytic Rarefaction
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Christian Schlotterer

Publication for Cleaning and Analyzing Next Generation Sequences

CANGS citations

 (6)
call_split

Protistan community analysis: key findings of a large scale molecular sampling

2016
PMCID: 4989302
PMID: 26859769
DOI: 10.1038/ismej.2016.10
call_split See protocol

[…] my Database (http://www.ncbi.nlm.nih.gov/taxonomy; RefSeq Release 57 (14 January 2013)) to annotate the OTUs with taxonomic information. For reasons of comparison, we also processed our data with the CANGS pipeline () and received similar results. […]

library_books

Forest Age and Plant Species Composition Determine the Soil Fungal Community Composition in a Chinese Subtropical Forest

2013
PLoS One
PMCID: 3694989
PMID: 23826151
DOI: 10.1371/journal.pone.0066829

[…] The searches were based on blastn against the NCBI nucleotide database for fungi excluding uncultured and environmental sequences using the blast based taxonomic assignment script of the software for Cleaning and Analyzing Next Generation Sequences - CANGS .Representative sequences of OTUs of the fungal ITS pyrotags assigned under the fungal kingdom were checked for chimeras using the chimera uchi […]

library_books

Differences in Soil Fungal Communities between European Beech (Fagus sylvatica L.) Dominated Forests Are Related to Soil and Understory Vegetation

2012
PLoS One
PMCID: 3475711
PMID: 23094057
DOI: 10.1371/journal.pone.0047500

[…] ccording to the NCBI taxonomy based on a blast search against the NCBI nucleotide database excluding uncultured sequences and environmental samples followed by a 66% consensus level as implemented in CANGS . A total of 1744 reads, which were not assigned to the fungal kingdom were cleared from the sequence dataset.To facilitate screening of potentially chimeric sequences, we established a referenc […]

library_books

CANGS DB: a stand alone web based database tool for processing, managing and analyzing 454 data in biodiversity studies

2011
BMC Res Notes
PMCID: 3146855
PMID: 21718534
DOI: 10.1186/1756-0500-4-227

[…] CANGS DB uses the CANGS [] taxonomy analysis pipeline to assign a taxonomic path to the newly sequenced 454 reads. CANGS taxonomy analysis pipeline does not rely on a pre-curated database for either 1 […]

library_books

CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation

2011
BMC Bioinformatics
PMCID: 3120705
PMID: 21599929
DOI: 10.1186/1471-2105-12-182

[…] , SCATA[], CANGS[] and WATERS[] but is different at some important points (see Table ). CLOTU is a web-based service platform running on a high performance computing environment, while QIIME, PANGEA, CANGS and WATERS must be installed locally, making subsequent analysis of extensive datasets time consuming.Compared to other pipelines, CLOTU provides a broad range of filtering options, with many un […]

library_books

Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity

2010
Mol Ecol
PMCID: 2916215
PMID: 20609083
DOI: 10.1111/j.1365-294X.2010.04669.x

[…] sequences of each of the other samples and used a BLAST similarity cutoff of 100% to identify non-redundant sequences of a given month in each of the other months. The procedure is implemented in the CANGS software package described in . For each monthwise sample we determined the number of distinct OTUs (i), the frequency of each of these OTUs in other samples (N) and the number of reads for this […]


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CANGS institution(s)
Institut für Populationsgenetik, Veterinärmedizinische Universität Wien, Vienna, Austria

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