CANOES specifications

Information


Unique identifier OMICS_03957
Name CANOES
Alternative name Copy number variants with an Arbitrary Number Of Exome Samples
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Source code URL http://www.columbia.edu/~ys2411/canoes/CANOES.R
Maintained Yes

Versioning


No version available

Documentation


Publication for Copy number variants with an Arbitrary Number Of Exome Samples

CANOES citation

library_books

XomAnnotate: Analysis of Heterogeneous and Complex Exome A Step towards Translational Medicine

2015
PLoS One
PMCID: 4408095
PMID: 25905921
DOI: 10.1371/journal.pone.0123569

[…] edicine. Among such tools, WEP [] identifies SNV and deletion/insertion polymorphisms (DIP) but does not address the identification/ prioritization of structural variation. Tools like ExomeCNV [] and CANOES [], on the other hand, detect only CNVs and loss of heterozygosity (LOH) based on pile-up or read distribution in the exonic region using a HMM. Unlike ExomeCNV, WEP, and CANOES; TREVA [] is a […]

CANOES institution(s)
Departments of Systems Biology and Biomedical Informatics, Columbia University Medical Center, New York, NY, USA; JP Sulzberger Columbia Genome Center, Columbia University Medical Center, New York, NY, USA; Cardiovascular Research Center, Massachusetts General Hospital, Boston, MA, USA; Department of Genetics, Harvard Medical School, Boston, MA, USA; Departments of Pediatrics and Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA; Center for Applied Genomics, Children’s Hospital of Philadelphia, Philadelphia, PA, USA; Departments of Pediatrics and Medicine, Columbia University Medical Center, New York, NY, USA; Department of Genetics, Yale University School of Medicine, New Haven, CT, USA; Howard Hughes Medical Institute, Yale University, New Haven, CT, USA; Department of Pediatrics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA
CANOES funding source(s)
Department of Systems Biology at Columbia University; JP Sulzberger Columbia Genome Center; National Institutes of Health (NIH); National Heart, Lung and Blood Institute (NHLBI); Pediatric Cardiac Genomics Consortium [U01-HL098147, U01-HL098153, U01-HL098163, U01-HL098123, U01-HL098162].

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