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- Homo sapiens
- person_outline Jing Li
Publications for CanProVar
Quantitative Analysis of Single Amino Acid Variant Peptides Associated with Pancreatic Cancer in Serum by an Isobaric Labeling Quantitative Method
[…] acid variant sequences were constituted by combining Data set “humsavar.txt” containing human polymorphisms and disease mutations (downloaded from www.uniprot.org/docs/humsavar on 11/25/2011) and MS-CanProVar database (downloaded from http://bioinfo.vanderbilt.edu/canprovar on 12/14/2011). The m/z tolerance of precursor ion and fragment ion were set as ±10 ppm and ±0.05 Da, respectively. Enzyme w […]
Identification of Potential Plk1 Targets in a Cell Cycle Specific Proteome through Structural Dynamics of Kinase and Polo Box Mediated Interactions
[…] e constructed for G1, S, G2/M, cytokinesis and checkpoints with cancer association to investigate the additional functions of Plk1 (). Subsequently, Human protein Atlas (http://www.proteinatlas.org), CanProVar (http://bioinfo.vanderbilt.edu/canprovar), CanSar (https://cansar.icr.ac.uk) and COSMIC (http://www.sanger.ac.uk/genetics/CGP/cosmic) resources were used to substantiate and cross check the […]
A Network Based Gene Expression Signature Informs Prognosis and Treatment for Colorectal Cancer Patients
[…] gene expression alteration, somatic mutations in mechanistically important genes may also lead to the same phenotype. Therefore, we further collected 549 genes with somatic mutations in CRC from the CanProVar database to enhance the network analysis using the NetWalker algorithm . Both signature gene lists and the mutated gene list included mechanistically important genes (e.g. driver mutations […]
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