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|Restrictions to use||None|
|Database management system||MySQL|
|Data access||File download, Browse|
- person_outline Michał Szczesniak
Publication for CANTATAdb
Regulation of Long Noncoding RNAs Responsive to Phytoplasma Infection in Paulownia tomentosa
[…] ia to discover conserved lncRNAs in the lncRNA database CANTATAdb (http://yeti.amu.edu.pl/CANTATA/): (i) all the lncRNA sequences identified in this study were aligned against the lncRNA sequences in CANTATAdb using BLASTN with a cutoff E value < 1E − 5 and (ii) lncRNA sequence identity to lncRNA sequences in other plant genomes was >20% . In addition, lncRNAs that may act as the miRNAs precurso […]
Non coding RNAs and Their Roles in Stress Response in Plants
[…] based database of plant lncRNAs, in which lncRNAs from 37 plant species were annotated, whereas PLNlncRbase collects all experimentally-identified lncRNAs in 43 plant species. In addition, PNRD and CANTATAdb are the two largest plant lncRNAs databases. PNRD includes lncRNA sequences of mainly four plant species, including Arabidopsis, rice, poplar, and maize, while the recently-released CANTATA […]
Alternative splicing shapes transcriptome but not proteome diversity in Physcomitrella patens
[…] To identify lncRNA candidates, a modified CANTATAdb pipeline was used. All supposed transcripts from the Cuffmerge assembly with class_code=‘u’, ‘x’, or ‘s’ were selected. Sequences of putative lncRNAs and mRNAs were excised from the genome w […]
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