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Citations per year

Number of citations per year for the bioinformatics software tool CanvasXpress
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Protocols

CanvasXpress specifications

Information


Unique identifier OMICS_05571
Name CanvasXpress
Software type Framework/Library, Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Output format SVG
Operating system Unix/Linux
Programming languages Javascript, R, Other
License GNU General Public License version 3.0
Computer skills Advanced
Version 17.4
Stability Stable
Source code URL https://codeload.github.com/neuhausi/canvasXpress/zip/17.4

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Publication for CanvasXpress

CanvasXpress citations

 (2)
call_split

Identification of Putative Nuclear Receptors and Steroidogenic Enzymes in Murray Darling Rainbowfish (Melanotaenia fluviatilis) Using RNA Seq and De Novo Transcriptome Assembly

2015
PLoS One
PMCID: 4658143
PMID: 26599404
DOI: 10.1371/journal.pone.0142636
call_split See protocol

[…] ggNOG [], and KEGG [] and subsets of these databases. Functional annotations, ORFs and transcripts were stored in a PostgreSQL database for access via a web browser-based viewer built with ExtJS4 and canvasXpress.Additional functional annotations were inferred by sequence similarity to other teleost sequences using BLAST searches [,], using controlled vocabularies obtained from the Gene Ontology d […]

library_books

Identification and characterization of three chemosensory receptor families in the cotton bollworm Helicoverpa armigera

2014
BMC Genomics
PMCID: 4112213
PMID: 25027790
DOI: 10.1186/1471-2164-15-597

[…] t for isoforms and paralogues; 3) performed Trimmed Mean Normalization using edger and estimated Fragments Per Kilobase Per Million reads (FPKM) []; and 4) visualized the results using ggplot2 [] and canvasXpress (http://canvasxpress.org/). From these data, certain cutoffs were used to make a true/false decision on whether a gene was expressed: a gene had to have at least four RNA-Seq reads aligne […]


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CanvasXpress institution(s)
Early Clinical Development, Pfizer Inc., Cambridge, MA, USA; Computational Genomics, Bristol-Myers Squibb Company, NJ, USA

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