CanvasXpress specifications

Information


Unique identifier OMICS_05571
Name CanvasXpress
Software type Framework/Library, Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Output format SVG
Operating system Unix/Linux
Programming languages Javascript, R, Other
License GNU General Public License version 3.0
Computer skills Advanced
Version 17.4
Stability Stable
Source code URL https://codeload.github.com/neuhausi/canvasXpress/zip/17.4

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Publication for CanvasXpress

CanvasXpress in publications

 (3)
PMCID: 5718019
PMID: 29225708
DOI: 10.1186/s12263-017-0589-8

[…] the scores as well as the additional data for each subject were transformed into a json data structure as well. the json data structures were interpreted and manipulated for visualization using canvasxpress (version 7.8, by isaac neuhaus, distributed under gnu gplv3). canvasxpress provides an interactive html5/javascript interface for easy data exploration and visualization. correlations […]

PMCID: 4658143
PMID: 26599404
DOI: 10.1371/journal.pone.0142636

[…] [], and kegg [] and subsets of these databases. functional annotations, orfs and transcripts were stored in a postgresql database for access via a web browser-based viewer built with extjs4 and canvasxpress., additional functional annotations were inferred by sequence similarity to other teleost sequences using blast searches [,], using controlled vocabularies obtained from the gene […]

PMCID: 4112213
PMID: 25027790
DOI: 10.1186/1471-2164-15-597

[…] for isoforms and paralogues; 3) performed trimmed mean normalization using edger and estimated fragments per kilobase per million reads (fpkm) []; and 4) visualized the results using ggplot2 [] and canvasxpress (http://canvasxpress.org/). from these data, certain cutoffs were used to make a true/false decision on whether a gene was expressed: a gene had to have at least four rna-seq reads […]


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CanvasXpress institution(s)
Early Clinical Development, Pfizer Inc., Cambridge, MA, USA; Computational Genomics, Bristol-Myers Squibb Company, NJ, USA

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