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caOmicsV specifications

Information


Unique identifier OMICS_11386
Name caOmicsV
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.10.0
Stability Stable
Requirements
R(>=3.2), igraph(>=0.7.1), bc3net(>=1.0.2)
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Hongen Zhang

Publication for caOmicsV

caOmicsV citation

library_books

Clustering of samples and variables with mixed type data

2017
PLoS One
PMCID: 5705083
PMID: 29182671
DOI: 10.1371/journal.pone.0188274

[…] author’s knowledge, however, biclustering methods either apply to quantitative [] or, in the field of pattern mining, to categorical data [], but not to a mix of different data types. the r package caomicsv [] provides a heatmap display for multiple “omics” and phenotypical data. however, the different datasets have to be provided at gene level, for instance dna methylation, mutations or dna […]


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caOmicsV institution(s)
Genetics Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA
caOmicsV funding source(s)
This work was supported by NCI intramural research funding in Center for Cancer Research, National Cancer Institute, National Institutes of Health, and the package was developed and tested on Helix system at the Center for Information Technology, National Institutes of Health, Bethesda, Maryland, USA.

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