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Protocols

CAP specifications

Information


Unique identifier OMICS_20999
Name CAP
Alternative name Citrus sinensis annotation project
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 2.1
Maintained Yes

Maintainers


  • person_outline Jia Wang
  • person_outline Ling-Ling Chen

Publication for Citrus sinensis annotation project

CAP citations

 (3)
library_books

Genomic Analysis of Terpene Synthase Family and Functional Characterization of Seven Sesquiterpene Synthases from Citrus sinensis

2017
Front Plant Sci
PMCID: 5573811
PMID: 28883829
DOI: 10.3389/fpls.2017.01481

[…] In order to identify putative TPS genes in sweet orange, BLASTp searches in the Citrus sinensis Annotation Project (CAP) were performed using as queries the keywords “linalool” and “limonene” (two abundant monoterpenes in citrus). In addition, in order to be not-dependent of the […]

library_books

Genome wide identification of sweet orange (Citrus sinensis) histone modification gene families and their expression analysis during the fruit development and fruit blue mold infection process

2015
Front Plant Sci
PMCID: 4525380
PMID: 26300904
DOI: 10.3389/fpls.2015.00607

[…] tigate the expression patterns of all CsHMs in different citrus tissues, the normalized RPKM (reads per kilobase per million mapped reads) values of these genes were extracted from the dataset of the Citrus sinensis Annotation Project (CAP) and visualized by the heat maps with transformed log10 values using MeV 4.7 software (). In order to gain an insight of their roles in citrus fruit development […]

call_split

An integrative analysis of the transcriptome and proteome of the pulp of a spontaneous late ripening sweet orange mutant and its wild type improves our understanding of fruit ripening in citrus

2014
J Exp Bot
PMCID: 3967095
PMID: 24600016
DOI: 10.1093/jxb/eru044
call_split See protocol

[…] Sequence similarity comparisons between Arabidopsis thaliana and C. sinensis proteins were performed by BLASTP in the Citrus sinensis Annotation Project (CAP) (http://citrus.hzau.edu.cn/). A search for amino acid sequences of Arabidopsis ABA- and ethylene-related proteins was carried out using the National Centre for […]

Citations

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CAP institution(s)
Center for Bioinformatics, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, China; School of Science, Huazhong Agricultural University, Wuhan, China; Key Laboratory of Horticultural Plant Biology of Ministry of Education, Huazhong Agricultural University, Wuhan, China
CAP funding source(s)
Supported by National Basic Research Program of China (2012AA10A304) and the National Natural Science Foundation of China (31271406 and 31222047).

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