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CapR specifications


Unique identifier OMICS_09337
Name CapR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Tsukasa Fukunaga <>

Publication for CapR

CapR in publications

PMCID: 5889505
DOI: 10.22034/ibj.22.3.202

[…] the surface of escherichia coli cells for bioremediation of phenolic compounds., the expression of laccase was regulated by a phenol-responsive promoter (a σ54promoter). the constitutively-expressed capr transcription activator was able to induce laccase expression in the presence of phenolic compounds., western blot analysis showed the expression and correct transfer of the enzyme to the outer […]

PMCID: 5841966
PMID: 29465604
DOI: 10.1097/MD.0000000000009995

[…] solved these problems and reduced the operation time with no increase in surgery complications., ever since professor holm put forward the concept of cylindrical abdominal–perineal resection (capr),[,] the prognosis of patients with low rectal cancer who undergo miles operation has improved objectively. during the capr operation, the patient needs to be turned over in a folding position […]

PMCID: 5829544
PMID: 29527214
DOI: 10.3389/fpls.2018.00090

[…] confirmed the induction of plant defense systems by examining the expression of molecular markers of induced resistance, including genes related to/encoding capsicum annuum pathogenesis-related 4 (capr4), ca chitinase 2 (cachi2), ca phenylalanine-i ammonia-lyase (capal), casar8.2, ca 1-aminocyclopropane-1-carboxylic acid oxidase (caacc), and ca proteinase inhibitor 2 (capin2). treatment […]

PMCID: 5907779
PMID: 29682409
DOI: 10.7717/peerj.4556

[…] 13, 29, 39 and 51 min, activating protein kinases that, in turn, trigger vdccs at 3 and 9 h in e. siliculosus. this process allows extracellular calcium entry and intracellular calcium release via capr-, naadp- and ip3-calcium channels located in the er. subsequently, the increase in intracellular calcium activates cams, cbls and cdpks mediating the increase of gene expression (see model in ), […]

PMCID: 5702650
PMID: 29214156
DOI: 10.3389/fmolb.2017.00074

[…] using its drp lyase activity followed by the nick sealing action of dna ligase (figure ). as mentioned above mitochondrial ribosomes are sensitive to cap (caps). mtdna can develop resistance to cap (capr) through mutation of the mtdna 16s rrna gene changing the specificity of cap for the mitochondrial ribosome and inhibiting its binding (blanc et al., ; kearsey and craig, ; wallace and chalkia, […]

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CapR institution(s)
Department of Computational Biology, Graduate School of Frontier Sciences, the University of Tokyo, Chiba, Japan; INTEC Inc, Tokyo, Japan; Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan; Atmosphere and Ocean Research Institute, University of Tokyo, Chiba, Japan
CapR funding source(s)
This study was supported by JSPS KAKENHI Grant Numbers 22240031, 23710231, 25134701 and 25870190.

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