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Information
| Unique identifier | OMICS_03405 |
|---|---|
| Name | CARA |
| Alternative name | Computer Aided Resonance Assignment |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
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CARA citations
(36)Molecular mechanism of influenza A NS1 mediated TRIM25 recognition and inhibition
[…] ples were measured at concentrations ranging between 0.1 and 0.5 mM in 20 mM Na2HPO4, 150 mM NaCl, 0.5 mM TCEP at pH 6.5. All spectra were processed with NMRPipe and analysed using Sparky, CCPNMR and CARA (http://cara.nmr.ch). For backbone resonance assignments of the PRYSPRY domain, HNCACB, CBCA(CO)NH and HNCA spectra were recorded. Backbone resonance assignment was obtained to a completion of 95 […]
Co(II) Coordination in Prokaryotic Zinc Finger Domains as Revealed by UV Vis Spectroscopy
[…] ). 1H and 15N chemical shifts were calibrated indirectly by using TMS as external references. All NMR spectroscopy data were processed with the TopSpin 3.5 software (Bruker) and analyzed by using the computer-aided resonance assignment [] (CARA) software (downloaded from cara.nmr.ch). […]
The Sam Sam interaction between Ship2 and the EphA2 receptor: design and analysis of peptide inhibitors
[…] Trimethylsilyl-3-propionic acid sodium salt-D4, 99% D, Armar Scientific, Switzerland) (0.0 ppm).Spectra were processed with VNMRJ 1.1D (Varian, Italy) and analyzed with the software NEASY included in CARA (http://cara.nmr.ch/doku.php/).The procedure suggested by Kjaergaard and collaborators was used to estimate chemical shift deviations from random coil values for Hα protons (CSD) (http://www1.bio […]
Structural Basis for EarP Mediated Arginine Glycosylation of Translation Elongation Factor EF P
[…] from two-dimensional (2D) 1H-15N HSQC and three-dimensional (3D) HNCA, CBCACONH, and HNCACB backbone experiments, using a constant time during 13C evolution (). The assignment process was assisted by CARA (http://cara.nmr.ch) and CcpNmr Analysis (63), and 98% of the backbone resonances could be assigned. Missing assignments for residues other than prolines are S123, R133, N140, V164, D175, and G18 […]
Structural Analysis of Porcine Reproductive and Respiratory Syndrome Virus Non structural Protein 7α (NSP7α) and Identification of Its Interaction with NSP9
[…] MRB under BMRB accession number 30014 (). All the NMR experiments were carried out at 298K on a Bruker Avance 600 MHz spectrometer. All spectra were processed using NMRPipe/Draw () and analyzed using CARA ().The structure of NSP7α was refined by CNS () based on the chemical shift assignments and NOE distance restraints. Backbone φ and ψ dihedral angle restraints obtained using TALOS+ (). H-bond re […]
Effect of position specific single point mutations and biophysical characterization of amyloidogenic peptide fragments identified from lattice corneal dystrophy patients
[…] all 13C and 15N experiments, chemical shifts were calibrated from the gyromagnetic ratio based on the H2O signal. The data were processed using TopSpin 2.0 (www.bruker-biospin.com) and analyzed using CARA (cara.nmr.ch). […]
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