CARNAC-LR specifications

Information


Unique identifier OMICS_30591
Name CARNAC-LR
Alternative name Clustering coefficient-based Acquisition of RNA Communities in Long Reads
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A file of reads.
Input format FASTA
Output data A text file with one line per cluster, each cluster containing the read indexes.
Operating system Unix/Linux
Programming languages C++, Python
License GNU Affero General Public License version 3
Computer skills Advanced
Stability Stable
Requirements
GCC
Maintained Yes

Download


download.png

Versioning


No version available

Documentation


Maintainer


  • person_outline Camille Marchet

Publication for Clustering coefficient-based Acquisition of RNA Communities in Long Reads

CARNAC-LR institution(s)
Université de Rennes, Inria, CNRS, IRISA, Rennes, France; Commissariat à l’Energie Atomique (CEA), Institut de Biologie Francois Jacob, Genoscope, Evry, France

CARNAC-LR reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review CARNAC-LR