Carnation DB specifications


Unique identifier OMICS_22033
Name Carnation DB
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes


  • person_outline Satoshi Tabata

Publication for Carnation DB

Carnation DB citation


Repressed expression of a gene for a basic helix loop helix protein causes a white flower phenotype in carnation

Breed Sci
PMCID: 5903971
PMID: 29681756
DOI: 10.1270/jsbbs.17072
call_split See protocol

[…] of adaptor and low-quality sequence regions. All sequences were mapped to the predicted transcriptome sequences and annotation data of carnation ‘Francesco’ genome (DCA_r1.0_cds.fna, downloaded from Carnation DB, by bowtie2 version 2.2.9. Fragments per kilobase of exon per million fragments mapped (FPKM) were calculated using eXpress version 1.5.1. The FPKM values […]

Carnation DB institution(s)
NARO Institute of Floricultural Science (NIFS), Tsukuba, Japan; Kazusa DNA Research InstituteChiba, Japan; Tokyo University of Agriculture and Technology, Tokyo, Japan; Research Institute, Suntory Global Innovation Center, Osaka, Japan; JST, ERATO, Higashiyama LiveHolonics Project, Nagoya University, Aichi, Japan; Division of Biological Science, Graduate School of Science, Nagoya University, Aichi, Japan
Carnation DB funding source(s)
Supported by grants from the Yoshio Itoh Fund of Tokyo University of Agriculture and Technology, and the Kazusa DNA Research Institute Foundation; by a genome-support grant from the National Institute of Agrobiological Sciences (NIAS) and JSPS KAKENHI grant number 24780038.

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