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Cascaded search specifications

Information


Unique identifier OMICS_09366
Name Cascaded search
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes

Subtool


  • Crux mass spectrometry analysis

Versioning


No version available

Documentation


Maintainer


  • person_outline William Noble

Publication for Cascaded search

Cascaded search citation

library_books

Improved Detection of Remote Homologues Using Cascade PSI BLAST: Influence of Neighbouring Protein Families on Sequence Coverage

2013
PLoS One
PMCID: 3577913
PMID: 23437136
DOI: 10.1371/journal.pone.0056449

[…] se. Some of highly populated superfamilies were selected from SCOP database and comparison of coverage of PSI-BLAST and Cascade PSI-BLAST was performed (using single query sequence) (). We found that cascaded search could cover 22%, 31% and 27% more average coverage at family, superfamily and fold level respectively, for diverse protein superfamilies, with an average precision score of 71% which i […]


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Cascaded search institution(s)
Department of Genome Sciences, University of Washington, Seattle, WA, USA; School of Mathematics and Statistics, University of Sydney, Camperdown, NSW, Australia; Department of Genome Sciences, Department of Computer Science and Engineering, University of Washington, Seattle, WA, USA

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