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Caseviewer specifications


Unique identifier OMICS_25774
Name Caseviewer
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Computer skills Medium
Version 2.1
Stability Stable
Maintained Yes




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Caseviewer citations


Eucommia ulmoides Ameliorates Glucotoxicity by Suppressing Advanced Glycation End Products in Diabetic Mice Kidney

PMCID: 5872683
PMID: 29495397
DOI: 10.3390/nu10030265

[…] sections were counter-stained with hematoxylin for 3 min, and all sections were scanned using the panoramic 250 flash iii slide scanner (3dhistech, ltd., budapest, hungary) and analyzed using the caseviewer software (3dhistech, ltd., budapest, hungary). renal morphometric changes were observed in 10 randomly selected glomeruli per mouse., the statistical analyses results are presented […]


Transcriptome analysis reveals potential mechanisms for different grain size between natural and resynthesized allohexaploid wheats with near identical AABB genomes

PMCID: 5799976
PMID: 29402221
DOI: 10.1186/s12870-018-1248-y

[…] epicarp inwards, and the cell area of the endosperm was measured using three randomly selected regions of the endosperm. in each of the measured regions, between 20 and 40 cells were measured with caseviewer 2.0 (3dhistech, ltd., hungary)., for sugar content analysis, the grains at 6 dap of taa10 and xx329 with three biological replicates were sampled, immediately frozen in liquid nitrogen […]


ketu mutant mice uncover an essential meiotic function for the ancient RNA helicase YTHDC2

PMCID: 5832417
PMID: 29360036
DOI: 10.7554/eLife.30919.049

[…] digitized using pannoramic flash 250 with 40×/0.95 na air objective and pannoramic confocal (3dhistech) with 40×/1.2 na water-immersion objective, respectively, and images were produced using the caseviewer 2.1 software (3dhistech)., brdu (sigma) was administered into 15 dpp-old animals by two rounds of intraperitoneal injections, with a one-hour interval between the first and second […]


Protocol for HER2 FISH Using a Non cross linking, Formalin free Tissue Fixative to Combine Advantages of Cryo preservation and Formalin Fixation

PMCID: 5908343
PMID: 29364207
DOI: 10.3791/55885

[…] with a her2:cen17 ratio ≤2.0 per nucleus are scored as normal, whereas those with a her2:cen17 ratio ≥2.0 are scored as amplified., perform quality analysis of the images with the open source caseviewer 2.1. evaluate at least 20 cells that are located in two different regions of the invasive component of the carcinoma as defined by a pathologist. include clearly distinguishable well […]


Inhibiting DPP4 in a mouse model of HHT1 results in a shift towards regenerative macrophages and reduces fibrosis after myocardial infarction

PMCID: 5734765
PMID: 29253907
DOI: 10.1371/journal.pone.0189805

[…] of the total left ventricular area. cell infiltration was determined by quantification of 2 to 4 digital images per heart, at the border zone inside the infarcted area, taken at 40x magnification (caseviewer 3d histech). the same method was used for quantification of capillary and artery presence, except analysis was now at the outside borderzone of the infarct, where cardiomyocytes were still […]


Beneficial effects of melittin on ovalbumin induced atopic dermatitis in mouse

PMCID: 5732199
PMID: 29247241
DOI: 10.1038/s41598-017-17873-2

[…] under a pannoramic midi slide scanner (3dhistech, bu, hungary). the thicknesses of the epidermis and dermis were measured from at least 10 random fields per section at 200-fold magnification with caseviewer 1.4 software (3dhistech, bu, hungary). the number of infiltrated mast cells was counted from at least five random fields per section at 400-fold magnification with caseviewer 1.4 […]

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