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CASP8 specifications

Information


Unique identifier OMICS_22292
Name CASP8
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline Nick Grishin

Publication for CASP8

CASP8 citations

 (3)
library_books

An ambiguity principle for assigning protein structural domains

2017
Sci Adv
PMCID: 5235333
PMID: 28097215
DOI: 10.1126/sciadv.1600552

[…] ible folds and, consequently, the quality of protein structure predictions. This can be verified by using target structures from the eighth edition of the Critical Assessment of Structure Prediction (CASP8) competition, for which the modeling difficulty is lowered when treating the structural domains separately rather than the whole protein chain (), the challenge being reduced to the relative pos […]

library_books

BeEP Server: using evolutionary information for quality assessment of protein structure models

2013
Nucleic Acids Res
PMCID: 3692104
PMID: 23729471
DOI: 10.1093/nar/gkt453

[…] ein structure models made available for the TS category (Tertiary Structure prediction) in the 8th community-wide experiment on the Critical Assessment of techniques for protein Structure Prediction (CASP8). In general, the CASP experiment is expected to involve heterogeneous sets of good quality structure models, as they are built ad hoc following diverse protocols. The predicted decoys were down […]

library_books

Fragment free approach to protein folding using conditional neural fields

2010
Bioinformatics
PMCID: 2881378
PMID: 20529922
DOI: 10.1093/bioinformatics/btq193

[…] results indicate that our CNF method clearly outperforms the CRF method on most of the test proteins. Previously, we have compared our CRF method with the popular fragment-based Robetta server in the CASP8 blind prediction and shown that our CRF method is on average better than Robetta on mainly-alpha or small beta proteins (Zhao et al., ). This article further confirms our advantage on mainly-alp […]

Citations

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CASP8 institution(s)
Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, USA
CASP8 funding source(s)
Supported in part by NIH grant GM67165 and Welch foundation grant I1505.

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