caspo specifications


Unique identifier OMICS_13475
Name caspo
Alternative name Cell ASP Optimizer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A prior knowledge network (PKN), an experimental setup, a phospho-proteomics dataset
Input format SIF, JSON, MIDAS
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 3.0.1
Stability Stable
Requirements joblib, networkx, numpy, pandas, pydotplus, pyparsing, scikit-learn, scipy, seaborn
Maintained Yes



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  • person_outline Santiago Videla <>

Publications for Cell ASP Optimizer

caspo institution(s)
LBSI, Fundacion Instituto Leloir (IIBBA-CONICET), Buenos Aires, Argentina; RWTH Aachen University, Faculty of Medicine, Joint Research Centre for Computational Biomedicine, Aachen, Germany; European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, UK; IRCCyN UMR CNRS 6597, Ecole Centrale de Nantes, France; CNRS, UMR 6074-IRISA, Rennes, France; Dyliss project, INRIA, Campus de Beaulieu, Rennes, France
caspo funding source(s)
Biotempo ANR-10-BLANC-0218 and TGFSysBio (ITMO Cancer, Plan Cancer 2014–2018)

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