CaspR specifications


Unique identifier OMICS_15387
Name CaspR
Interface Web user interface
Restrictions to use None
Input format FASTA
Output format PDB
Computer skills Basic
Stability No
Maintained No


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Publication for CaspR

CaspR in publications

PMCID: 4982073
PMID: 26913589
DOI: 10.1111/febs.13690

[…] initial attempts to solve the structure of rosa by molecular replacement were unsuccessful despite a thorough search for appropriate template structures using the online tools phyre2 , fugue and caspr . therefore, rosa labelled with selenomethionine (semet) (seven methionine residues in 353 amino acids) was produced, and the structure was solved by multiple‐wavelength anomalous dispersion […]

PMCID: 3116920
PMID: 21698144
DOI: 10.1371/journal.pgen.1002117

[…] was carried out using coot version 0.5 and refmac in the ccp4 suite . the root mean square deviation (rmsd), a measure of the overall similarity between protein backbones, was calculated using caspr . interpretation was focused on chain b, which displayed lower overall b-factors and had fewer crystal-packing contacts. coordinates have been deposited in pdb with accession 3ry9., we used […]

PMCID: 3073944
PMID: 21494601
DOI: 10.1371/journal.pone.0018528

[…] the phenix software including manual rebuilding and rigid body refinement followed by several cycles of positional refinement., for the second crystal form, we used molecular replacement on the caspr server and the mad-solved three-dimensional structure of ca3427 as template. the structure was refined using coot and iterative steps of manual rebuilding and positional refinement using […]

PMCID: 2515308
PMID: 18652651
DOI: 10.1186/1472-6807-8-33

[…] amplitudes. rfree is calculated from a randomly chosen 9.9% of reflections., the c. albicans tpk crystal structure in complex with thiamine has been determined by molecular replacement using the caspr server [,]. to generate the c. albicans tpk models, we used the available three-dimensional structures of saccharomyces cerevisiae and mus musculus thiamine pyrophosphokinase (pdb id 1ig0 […]

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CaspR institution(s)
Information Génomique & Structurale (UPR CNRS 2589), Institut de Biologie Structurale et Microbiologie, Marseille, France

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