CATCHprofiles specifications


Unique identifier OMICS_02171
Name CATCHprofiles
Alternative name Clustering and AlignmenT of ChIp profiles
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input data Selected areas from the ChIP profiling data, e.g. areas obtained from peak calling, or areas selected from annotation, such as promoter regions
Input format WIG, BED
Output data Profile patterns, positions, cluster tree
Output format CATCH, CSV, BED, NEWICK
Operating system Unix/Linux, Mac OS, Windows
Programming languages C, Java
Computer skills Medium
Version 3.0
Stability Stable
Maintained Yes



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CATCHprofiles article

CATCHprofiles institution(s)
Centre for Molecular and Biomolecular Informatics, Radboud University Nijmegen Medical Centre, Nijmegen, Netherlands; Department of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark; Molecular Biology, Faculty of Science, Nijmegen Centre for Molecular Life Sciences, Nijmegen, Netherlands; eScience Centre, University of Copenhagen, Copenhagen, Denmark
CATCHprofiles funding source(s)
This work was funded in part by the European HEROIC project for epigenetic research (EU FP6 Integrated Project), by the Stichting Nationale Computerfaciliteiten (National Computing Facilities Foundation, NCF), by the Nederlandse Organisatie voor Wetenschappelijk Onderzoek (Netherlands Organization for Scientific Research, NOW).

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