CATCHprofiles specifications

Unique identifier:
OMICS_02171
Software type:
Application/Script
Restrictions to use:
None
Input format:
WIG, BED
Output format:
CATCH, CSV, BED, NEWICK
Programming languages:
C, Java
Version:
3.0
Maintained:
Yes
Name:
Clustering and AlignmenT of ChIp profiles
Interface:
Graphical user interface
Input data:
Selected areas from the ChIP profiling data, e.g. areas obtained from peak calling, or areas selected from annotation, such as promoter regions
Output data:
Profile patterns, positions, cluster tree
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Medium
Stability:
Stable

versioning

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CATCHprofiles distribution

download

CATCHprofiles support

Documentation

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Publications

Institution(s)

Centre for Molecular and Biomolecular Informatics, Radboud University Nijmegen Medical Centre, Nijmegen, Netherlands; Department of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark; Molecular Biology, Faculty of Science, Nijmegen Centre for Molecular Life Sciences, Nijmegen, Netherlands; eScience Centre, University of Copenhagen, Copenhagen, Denmark

Funding source(s)

This work was funded in part by the European HEROIC project for epigenetic research (EU FP6 Integrated Project), by the Stichting Nationale Computerfaciliteiten (National Computing Facilities Foundation, NCF), by the Nederlandse Organisatie voor Wetenschappelijk Onderzoek (Netherlands Organization for Scientific Research, NOW).

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