List of bioinformatics categories

Software tools and databases for 13C-fluxomic analysis.

Find and compare the best bioinformatics software for analyzing 16S ribosomal RNA sequencing data. Tools are ranked by the biomedical research community.

aCGH data analysis

Find and compare the best bioinformatics software for analyzing array comparative genomic hybridization data. Tools are ranked by the biomedical research community.

Amino acid sequence alignment

Amplicon sequencing analysis

Find and compare the best bioinformatics software for analyzing amplicon sequencing data. Tools are ranked by the biomedical research community.

Antibody array analysis

Find and compare the best bioinformatics software for analyzing antibody microarray data. Tools are ranked by the biomedical research community.

ATAC-seq analysis

Find and compare the best bioinformatics software for analyzing transposase accessible chromatin with high-throughput sequencing. Tools are ranked by the biomedical research community.

Scanning force microscopy

Find and compare the best bioinformatics software tools for analysing scanning force microscopy images. Tools are ranked by the biomedical research community.

Lipidomic profiles analysis

Drug design

Find and compare the best bioinformatics tools for drug discovery analysis. Programs and databases are ranked by the biomedical research community.

Epigenomics

Find and compare the best bioinformatics tools and databases for epigenomic analysis. Programs and databases are ranked by the biomedical research community.

Genomics

Find and compare the best bioinformatics tools for genome analysis. Software tools and databases are ranked by the biomedical research community.

Metabolic engineering

Find and compare the best bioinformatics tools for metabolic engineering analysis. Tools are ranked by the biomedical research community.

Metabolomics

Find and compare the best bioinformatics tools and databases for metabolomic analysis. Programs and databases are ranked by the biomedical research community.

Phenomics

Find and compare the best bioinformatics tools for phenomic analysis. Programs and databases are ranked by the biomedical research community.

Proteomics

Find and compare the best bioinformatics tools and databases for proteomic analysis. Programs and databases are ranked by the biomedical research community.

Transcriptomics

Find and compare the best bioinformatics tools for transcriptome analysis. Software tools and databases are ranked by the biomedical research community.

Connectivity analysis

Connectivity databases

Bright-field microscopy

Find and compare the best bioinformatics software for analysing bright-field microscopy images. Tools are ranked by the biomedical research community.

BS-seq analysis

Find and compare the best bioinformatics software for analyzing bisulfite sequencing data. Tools are ranked by the biomedical research community.

CAGE analysis

Find and compare the best bioinformatics software for analyzing CAGE data. Tools are ranked by the biomedical research community.

Chemoinformatics databases

ChIP-seq analysis

Find and compare the best bioinformatics software for analyzing ChIP sequencing data. Tools are ranked by the biomedical research community.

ChIP-on-chip analysis

Find and compare the best bioinformatics software for analyzing ChIP-on-chip data. Tools are ranked by the biomedical research community.

ChIA-PET analysis

Find and compare the best bioinformatics software for analyzing chromatin interaction analysis by paired-end tag sequencing. Tools are ranked by the biomedical research community.

ChIP-exo analysis

Find and compare the best bioinformatics software for analyzing ChIP-exonuclease data. Tools are ranked by the biomedical research community.

5C-seq analysis

Find and compare the best bioinformatics software for 5C-seq analysis. Tools are ranked by the biomedical research community.

3C-seq analysis

Find and compare the best bioinformatics software for 3C-seq analysis. Tools are ranked by the biomedical research community.

4C-seq analysis

Find and compare the best bioinformatics software for 4C-seq analysis. Tools are ranked by the biomedical research community.

Circular dichroism spectroscopy

Find and compare the best bioinformatics software for circular dichroism spectroscopy data analysis. Tools are ranked by the biomedical research community.

CLIP-seq analysis

Find and compare the best bioinformatics software for analyzing cross-linking immunoprecipitation sequencing data. Tools are ranked by the biomedical research community.

Computational neuroscience modelling

Computerized tomography scan imaging

Here, we surveyed softwares tools for computerized tomography scan imaging.

Conventional fluorescence microscopy

Find and compare the best bioinformatics software for analysing conventional fluorescence microscopy images. Tools are ranked by the biomedical research community.

Correlative microscopy

Find and compare the best bioinformatics software for analysing correlative microscopy images. Tools are ranked by the biomedical research community.

CRISPR/Cas9 screen analysis

Find and compare the best bioinformatics software for analyzing CRISPR/Cas9 screens based on high-throughput sequencing. Tools are ranked by the biomedical research community.

cryo-EM

Find and compare the best bioinformatics software for analysing cryo-EM images. Tools are ranked by the biomedical research community.

cryo-electron tomography

Find and compare the best bioinformatics software for analysing cryo-electron tomography images. Tools are ranked by the biomedical research community.

Cytogenetics

Transformation

Find and compare the best bioinformatics software for scRNA-seq data transformation. Tools are ranked by the biomedical research community.

De novo sequencing analysis

Find and compare the best bioinformatics software for analyzing de novo genome sequencing data. Tools are ranked by the biomedical research community.

Deep mutational scanning analysis

Find and compare the best bioinformatics software for analyzing deep mutational scanning data. Tools are ranked by the biomedical research community.

dRNA-seq analysis

Find and compare the best bioinformatics software for analyzing differential RNA sequencing data. Tools are ranked by the biomedical research community.

Diffusion magnetic resonance imaging analysis

Find and compare the best bioinformatics software tools for analysing diffusion magnetic resonance images. Tools are ranked by the biomedical research community.

DGE analysis

Find and compare the best bioinformatics software for analyzing digital gene expression data. Tools are ranked by the biomedical research community.

dPCR

DNA fingerprinting

Here, we surveyed bioinformatics software tools for the analysis of DNA fingerprint images.

DNA methylation array analysis

Find and compare the best bioinformatics software for analyzing DNA methylation microarray data. Tools are ranked by the biomedical research community.

DNA modification databases

Find and compare the best searchable databases of covalent DNA modifications. Bioinformatics tools are ranked by the biomedical research community.

DNA modification analysis

Find and compare the best bioinformatics software for DNA modifications analysis. Bioinformatics tools are ranked by the biomedical research community.

DNA sequence databases

DNA structure analysis

Find and compare the best bioinformatics software for DNA structure analysis. Software tools and databases are ranked by the biomedical research community.

DNA structure databases

DNA-protein interaction analysis

DNA-Protein interaction databases

DNase-seq analysis

Find and compare the best bioinformatics software for analyzing the sequencing of DNase I hypersensitive sites. Tools are ranked by the biomedical research community.

Drop-seq analysis

Find and compare the best bioinformatics software for analyzing droplet sequencing data. Tools are ranked by the biomedical research community.

Clinical electrophysiology

Find and compare the best bioinformatics software tools for managing and analyzing clinical electrophysiology images and signals. Tools are ranked by the biomedical research community.

Epigenome data enrichment

Epigenome data visualization

Exo-miRNA detection

Find and compare the best bioinformatics software for identifying exo-miRNAs from small RNA sequencing experiments. Tools are ranked by the biomedical research community.

File format conversion

Flow cytometry

Find and compare bioinformatics software tools for the analysis of flow cytometry data.

FRAP

Find and compare the best bioinformatics software for analysing fluorescence recovery after photbleaching microscopy image data. Tools are ranked by the biomedical research community.

Fluorescence spectroscopy

Find and compare the best bioinformatics software tools for analyzing fluorescence spectroscopy data. Tools are ranked by the biomedical research community.

Functional magnetic resonance imaging

Find and compare the best bioinformatics software tools for analysing functional magnetic resonance images. Tools are ranked by the biomedical research community.

Transcription analysis

Find and compare the best bioinformatics tools for gene expression analysis. Software tools and databases are ranked by the biomedical research community.

Gene expression microarray analysis

Find and compare the best bioinformatics software for analyzing gene expression microarray data. Tools are ranked by the biomedical research community.

Genome annotation

Find and compare the best bioinformatics tools for genome annotation. Software tools and databases are ranked by the biomedical research community.

Genome data enrichment

Genome data visualization

Genome editing databases

Genome edition

Find and compare the best bioinformatics tools for genome editing. Software tools and databases are ranked by the biomedical research community.

GWAS

GBS analysis

Find and compare the best bioinformatics software for analyzing genotyping by sequencing data. Tools are ranked by the biomedical research community.

GRO-seq analysis

Find and compare the best bioinformatics software for analyzing global run-on sequencing data. Tools are ranked by the biomedical research community.

Glycomics analysis

Here, we surveyed carbohydrate databases that have potential utility for glycoscientists and researchers entering the glycosciences.

Glycomics databases

Hi-C analysis

Find and compare the best bioinformatics software for analyzing Hi-C data. Tools are ranked by the biomedical research community.

High-throughput plant phenotyping

Find and compare the best bioinformatics software tools for analyzing high-throughput plant phenotyping data. Tools are ranked by the biomedical research community.

HT-SELEX analysis

Find and compare the best bioinformatics software for analyzing high-throughput SELEX data. Tools are ranked by the biomedical research community.

Image enhancement

Find and compare the best bioinformatics software tools for enhancing and correcting ultrasonic images quality. Tools are ranked by the biomedical research community.

Rep-seq analysis

Find and compare the best bioinformatics software for analyzing repertoire sequencing data. Tools are ranked by the biomedical research community.

Immune system analysis

Find and compare the best bioinformatics software for analyzing immunological data. Tools are ranked by the biomedical research community.

Immunology databases

Find and compare immunological databases. Biological tools are ranked by the biomedical research community.

Information extraction

Find and compare the best bioinformatics software tools for extracting information. Tools are ranked by the biomedical research community.

Information retrieval

Find and compare the best bioinformatics software tools for information retrieval. Tools are ranked by the biomedical research community.

Iso-Seq

Find and compare the best bioinformatics software for Iso-Seq analysis. Tools are ranked by the biomedical research community.

Laser scanning microscopy

Find and compare the best bioinformatics software for analysing laser scanning microscopy images. Tools are ranked by the biomedical research community.

LINCS L1000

Lipidomics databases

Find and compare the best searchable databases on lipidomics. Databases are ranked by the biomedical research community.

Live cell array analysis

Low-level RNA analysis

Macroscope & basic digital camera imaging

Find and compare the best bioinformatics software for analysing macroscope and basic digital camera images. Tools are ranked by the biomedical research community.

Magnetic resonance imaging

Find and compare the best bioinformatics software for analysing biomedical magnetic resonance images. Tools are ranked by the biomedical research community.

Mass cytometry

Software tools and databases for mass cytometry analysis.

MS-based targeted lipidomics

MS-based targeted metabolomics

Here, we surveyed bioinformatics software tools for mass spectrometry-based targeted metabolomic data analysis.

MS-based untargeted glycomics