Mass spectrometry imaging
Find and compare the best bioinformatics software for analysing mass spectrometry images and data. Tools are ranked by the biomedical research community.
MS-based untargeted lipidomics
Find and compare the best bioinformatic software tools for analyzing MS-based untargeted lipidomics data. Tools are ranked by the biomedical research community.
MS-based untargeted metabolomics
Here, we surveyed bioinformatics software tools for mass spectrometry-based untargeted metabolomic data analysis.
MS-based targeted proteomics
Here, we surveyed bioinformatics software tools for mass spectrometry-based targeted proteomic data analysis.
MS-based untargeted proteomics
Here, we surveyed bioinformatics software tools for mass spectrometry-based untargeted proteomic data analysis.
Mathematical model databases
Mathematical modeling
Find and compare the best bioinformatics software for mathematical modeling and computer simulation. Tools are ranked by the biomedical research community.
Medical phenotype analysis
Medical phenotype databases
Membrane protein analysis
Membrane protein databases
Metabolic engineering databases
Metabolic profiles analysis
Metabolite databases
Metabolome data enrichment
Metabolome data visualization
MS-based metaproteomics
Here, we surveyed bioinformatics software tools for mass spectrometry-based metaproteomic data analysis.
Metatranscriptomic sequencing analysis
Find and compare the best bioinformatics software for analyzing metatranscriptomic sequencing data. Tools are ranked by the biomedical research community.
MeDIP-seq analysis
Find and compare the best bioinformatics software for analyzing methylated DNA immunoprecipitation sequencing data. Tools are ranked by the biomedical research community.
MeRIP-seq analysis
Find and compare the best bioinformatics software for analyzing methylated RNA immunoprecipitation sequencing data. Tools are ranked by the biomedical research community.
MethylCap-seq analysis
Find and compare the best bioinformatics software for analyzing MethylCap-seq data. Tools are ranked by the biomedical research community.
miRNA array analysis
Find and compare the best bioinformatics software for analyzing microRNA microarray data. Tools are ranked by the biomedical research community.
Microscopic and macroscopic phenotype databases
Microscopic phenotype analysis
Find and compare the best bioinformatics software tools for analyzing microscopic scale phenotype data. Tools are ranked by the biomedical research community.
Miscellaneous
MNase-seq analysis
Find and compare the best bioinformatics software for analyzing MNase-seq data. Tools are ranked by the biomedical research community.
nCounter System
Here, we surveyed packages, web applications, frameworks, SaaS, pipelines and workflows for the analysis of nCounter System data.
Neuroimaging analysis
Neuroimaging databases
Neurophysiology analysis
Neurophysiology databases
Neuropsychology analysis
NMR-based lipidomics
NMR-based metabolomics
List of analytical tools for NMR-based metabolomic analysis.
NMR-based proteomics analysis
List of analytical tools for NMR-based proteomic analysis.
NMR-based transcriptomic analysis
Non-coding RNA analysis
Find and compare the best bioinformatics tools for non-coding RNA analysis. Software tools and databases are ranked by the biomedical research community.
Non-coding RNA databases
Nuclear medicine imaging
Find and compare the best bioinformatics software for analysing nuclear medicine images. Tools are ranked by the biomedical research community.
Nucleosome positioning
Software tools and databases to predict nucleosome positioning.
Nucleotide sequence alignment
Ontology generation
Find and compare the best bioinformatics tools for generating ontologies from biomedical and scientific texts. Software tools are ranked by the biomedical research community.
Optical mapping
Here, we surveyed bioinformatics software tools for analysing optical mapping datasets.
Optical tomography
Here, we surveyed bioinformatics software tools for analysis of optical tomography data.
Organic chemistry reactions databases
oxBS/TAB/fCAB/CAB-seq
Here, we surveyed desktop applications, web applications, cloud computing tools, libraries for oxBS-seq/TAB-seq/fCAB-seq/CAB-seq data analysis.
Degradome-seq analysis
Find and compare the best bioinformatics software for analyzing degradome sequencing (also referred to PARE) data. Tools are ranked by the biomedical research community.
Patch-clamp
Find and compare the best bioinformatics software for patch clamp technique analysis. Tools are ranked by the biomedical research community.
Peptide databases
Peptide array analysis
Find and compare the best bioinformatics software for analyzing peptide microarray data. Tools are ranked by the biomedical research community.
Peptide prediction
Phase-contrast microscopy
Find and compare the best bioinformatics software for analysing phase-contrast microscopy images. Tools are ranked by the biomedical research community.
Phylogenetics
Find and compare the best bioinformatics tools for phylogenetic analysis. Software tools and databases are ranked by the biomedical research community.
Phylogenetics databases
Find and compare phylogenomic databases. Biological tools are ranked by the biomedical research community..
Polar surface area prediction
Pool-seq analysis
Find and compare the best bioinformatics software for analyzing sequencing data of pools of individuals. Tools are ranked by the biomedical research community.
Population genetic databases
Population genetic analysis
Find and compare the best bioinformatics tools for population genome analysis. Software tools are ranked by the biomedical research community.
RNA modification analysis
Find and compare the best bioinformatics tools for post-transcriptional modification analysis. Software tools and databases are ranked by the biomedical research community.
RNA modification databases
PTM analysis
Here, we surveyed databases and bioinformatics software tools for the analysis of post-translational modification sites.
PTM databases
Protein interaction analysis
Protein interaction databases
Protein physicochemical analysis
Protein physicochemical databases
Protein sequence analysis
Find and compare bioinformatics tools for the analyzing protein sequences. Software tools and databases are ranked by the biomedical research community.
Protein sequence databases
Protein structure analysis
Find and compare the best bioinformatics software for analyzing protein sequence data. Tools are ranked by the biomedical research community.
Protein structure databases
Proteogenomics analysis
Here, we surveyed bioinformatics software tools for proteogenomic data analysis.
Proteome data enrichment
Proteome data visualization
qPCR
Here, we surveyed packages, web applications, frameworks, SaaS, pipelines and workflows for quantitative real-time polymerase chain reaction (qPCR).
RAD-seq analysis
Find and compare the best bioinformatics software for analyzing restriction site-associated DNA sequencing data. Tools are ranked by the biomedical research community.
RPPA analysis
Find and compare the best bioinformatics software for analyzing reverse phase protein array data. Tools are ranked by the biomedical research community.
Ribo-seq analysis
Find and compare the best bioinformatics software for analyzing ribosome profiling data. Tools are ranked by the biomedical research community.
Capillary electrophoresis analysis
RNA-seq analysis
Find and compare the best bioinformatics software for analyzing RNA sequencing data. Tools are ranked by the biomedical research community.
RNA structure analysis
Find and compare the best bioinformatics software for RNA structure analysis. Software tools and databases are ranked by the biomedical research community.
RNA structure databases
RNA structurome analysis
Find and compare the best bioinformatics software for analyzing high-throughput structure-probing data. Tools are ranked by the biomedical research community.
Transcription databases
RNA-Protein interaction analysis
RNA-Protein interaction databases
Sanger sequencing
Here, we surveyed bioinformatics software tools for the analysis of Sanger sequencing data.
STARR-seq analysis
Find and compare the best bioinformatics software for analyzing STARR sequencing data. Tools are ranked by the biomedical research community.
SAGE analysis
Metagenomic sequencing analysis
Find and compare the best bioinformatics software for analyzing shotgun metagenomic sequencing data. Tools are ranked by the biomedical research community.
SPIM
Find and compare the best bioinformatics software tools for analysing and using selective plane illumination microscopy. Tools are ranked by the biomedical research community.
scDNA-seq analysis
Find and compare the best bioinformatics software for analyzing single-cell DNA sequencing data. Tools are ranked by the biomedical research community.
Single-cell qPCR
scRNA-seq analysis
Find and compare the best bioinformatics software for analyzing single-cell RNA sequencing data. Tools are ranked by the biomedical research community.
sRNA-seq analysis
Find and compare the best bioinformatics software for analyzing small RNA sequencing data. Tools are ranked by the biomedical research community.
Small-angle scattering
Find and compare the best bioinformatics software for analysing small-angle scattering data. Tools are ranked by the biomedical research community.
SNP array data analysis
Ultrasonic imaging
Find and compare the best bioinformatics software for ultrasonic images analysis. Tools are ranked by the biomedical research community.
Strand-seq analysis
Find and compare the best bioinformatics software for analyzing single cell DNA template strand sequencing data. Tools are ranked by the biomedical research community.
Super-resolution imaging
Here we surveyed bioinformatics software tools for reconstruction of high-density super-resolution microscopy data.
Surface plasmon resonance
