Gene expression microarray analysis
Find and compare the best bioinformatics software for analyzing gene expression microarray data. Tools are ranked by the biomedical research community.
Genome annotation
Find and compare the best bioinformatics tools for genome annotation. Software tools and databases are ranked by the biomedical research community.
Genome data enrichment
Genome data visualization
Genome editing databases
Genome edition
Find and compare the best bioinformatics tools for genome editing. Software tools and databases are ranked by the biomedical research community.
GWAS
GBS analysis
Find and compare the best bioinformatics software for analyzing genotyping by sequencing data. Tools are ranked by the biomedical research community.
GRO-seq analysis
Find and compare the best bioinformatics software for analyzing global run-on sequencing data. Tools are ranked by the biomedical research community.
Glycomics analysis
Here, we surveyed carbohydrate databases that have potential utility for glycoscientists and researchers entering the glycosciences.
Glycomics databases
Hi-C analysis
Find and compare the best bioinformatics software for analyzing Hi-C data. Tools are ranked by the biomedical research community.
High-throughput plant phenotyping
Find and compare the best bioinformatics software tools for analyzing high-throughput plant phenotyping data. Tools are ranked by the biomedical research community.
HT-SELEX analysis
Find and compare the best bioinformatics software for analyzing high-throughput SELEX data. Tools are ranked by the biomedical research community.
Image enhancement
Find and compare the best bioinformatics software tools for enhancing and correcting ultrasonic images quality. Tools are ranked by the biomedical research community.
Rep-seq analysis
Find and compare the best bioinformatics software for analyzing repertoire sequencing data. Tools are ranked by the biomedical research community.
Immune system analysis
Find and compare the best bioinformatics software for analyzing immunological data. Tools are ranked by the biomedical research community.
Immunology databases
Find and compare immunological databases. Biological tools are ranked by the biomedical research community.
Information extraction
Find and compare the best bioinformatics software tools for extracting information. Tools are ranked by the biomedical research community.
Information retrieval
Find and compare the best bioinformatics software tools for information retrieval. Tools are ranked by the biomedical research community.
Iso-Seq
Find and compare the best bioinformatics software for Iso-Seq analysis. Tools are ranked by the biomedical research community.
Laser scanning microscopy
Find and compare the best bioinformatics software for analysing laser scanning microscopy images. Tools are ranked by the biomedical research community.
LINCS L1000
Lipidomics databases
Find and compare the best searchable databases on lipidomics. Databases are ranked by the biomedical research community.
Live cell array analysis
Low-level RNA analysis
Macroscope & basic digital camera imaging
Find and compare the best bioinformatics software for analysing macroscope and basic digital camera images. Tools are ranked by the biomedical research community.
Magnetic resonance imaging
Find and compare the best bioinformatics software for analysing biomedical magnetic resonance images. Tools are ranked by the biomedical research community.
Mass cytometry
Software tools and databases for mass cytometry analysis.
MS-based targeted lipidomics
MS-based targeted metabolomics
Here, we surveyed bioinformatics software tools for mass spectrometry-based targeted metabolomic data analysis.
MS-based untargeted glycomics
Mass spectrometry imaging
Find and compare the best bioinformatics software for analysing mass spectrometry images and data. Tools are ranked by the biomedical research community.
MS-based untargeted lipidomics
Find and compare the best bioinformatic software tools for analyzing MS-based untargeted lipidomics data. Tools are ranked by the biomedical research community.
MS-based untargeted metabolomics
Here, we surveyed bioinformatics software tools for mass spectrometry-based untargeted metabolomic data analysis.
MS-based targeted proteomics
Here, we surveyed bioinformatics software tools for mass spectrometry-based targeted proteomic data analysis.
MS-based untargeted proteomics
Here, we surveyed bioinformatics software tools for mass spectrometry-based untargeted proteomic data analysis.
Mathematical model databases
Mathematical modeling
Find and compare the best bioinformatics software for mathematical modeling and computer simulation. Tools are ranked by the biomedical research community.
Medical phenotype analysis
Medical phenotype databases
Membrane protein analysis
Membrane protein databases
Metabolic engineering databases
Metabolic profiles analysis
Metabolite databases
Metabolome data enrichment
Metabolome data visualization
MS-based metaproteomics
Here, we surveyed bioinformatics software tools for mass spectrometry-based metaproteomic data analysis.
Metatranscriptomic sequencing analysis
Find and compare the best bioinformatics software for analyzing metatranscriptomic sequencing data. Tools are ranked by the biomedical research community.
MeDIP-seq analysis
Find and compare the best bioinformatics software for analyzing methylated DNA immunoprecipitation sequencing data. Tools are ranked by the biomedical research community.
MeRIP-seq analysis
Find and compare the best bioinformatics software for analyzing methylated RNA immunoprecipitation sequencing data. Tools are ranked by the biomedical research community.
MethylCap-seq analysis
Find and compare the best bioinformatics software for analyzing MethylCap-seq data. Tools are ranked by the biomedical research community.
miRNA array analysis
Find and compare the best bioinformatics software for analyzing microRNA microarray data. Tools are ranked by the biomedical research community.
Microscopic and macroscopic phenotype databases
Microscopic phenotype analysis
Find and compare the best bioinformatics software tools for analyzing microscopic scale phenotype data. Tools are ranked by the biomedical research community.
Miscellaneous
MNase-seq analysis
Find and compare the best bioinformatics software for analyzing MNase-seq data. Tools are ranked by the biomedical research community.
nCounter System
Here, we surveyed packages, web applications, frameworks, SaaS, pipelines and workflows for the analysis of nCounter System data.
Neuroimaging analysis
Neuroimaging databases
Neurophysiology analysis
Neurophysiology databases
Neuropsychology analysis
NMR-based lipidomics
NMR-based metabolomics
List of analytical tools for NMR-based metabolomic analysis.
NMR-based proteomics analysis
List of analytical tools for NMR-based proteomic analysis.
NMR-based transcriptomic analysis
Non-coding RNA analysis
Find and compare the best bioinformatics tools for non-coding RNA analysis. Software tools and databases are ranked by the biomedical research community.
Non-coding RNA databases
Nuclear medicine imaging
Find and compare the best bioinformatics software for analysing nuclear medicine images. Tools are ranked by the biomedical research community.
Nucleosome positioning
Software tools and databases to predict nucleosome positioning.
Nucleotide sequence alignment
Ontology generation
Find and compare the best bioinformatics tools for generating ontologies from biomedical and scientific texts. Software tools are ranked by the biomedical research community.
Optical mapping
Here, we surveyed bioinformatics software tools for analysing optical mapping datasets.
Optical tomography
Here, we surveyed bioinformatics software tools for analysis of optical tomography data.
Organic chemistry reactions databases
oxBS/TAB/fCAB/CAB-seq
Here, we surveyed desktop applications, web applications, cloud computing tools, libraries for oxBS-seq/TAB-seq/fCAB-seq/CAB-seq data analysis.
Degradome-seq analysis
Find and compare the best bioinformatics software for analyzing degradome sequencing (also referred to PARE) data. Tools are ranked by the biomedical research community.
Patch-clamp
Find and compare the best bioinformatics software for patch clamp technique analysis. Tools are ranked by the biomedical research community.
Peptide databases
Peptide array analysis
Find and compare the best bioinformatics software for analyzing peptide microarray data. Tools are ranked by the biomedical research community.
Peptide prediction
Phase-contrast microscopy
Find and compare the best bioinformatics software for analysing phase-contrast microscopy images. Tools are ranked by the biomedical research community.
Phylogenetics
Find and compare the best bioinformatics tools for phylogenetic analysis. Software tools and databases are ranked by the biomedical research community.
Phylogenetics databases
Find and compare phylogenomic databases. Biological tools are ranked by the biomedical research community..
Polar surface area prediction
Pool-seq analysis
Find and compare the best bioinformatics software for analyzing sequencing data of pools of individuals. Tools are ranked by the biomedical research community.
Population genetic databases
Population genetic analysis
Find and compare the best bioinformatics tools for population genome analysis. Software tools are ranked by the biomedical research community.
RNA modification analysis
Find and compare the best bioinformatics tools for post-transcriptional modification analysis. Software tools and databases are ranked by the biomedical research community.
RNA modification databases
PTM analysis
Here, we surveyed databases and bioinformatics software tools for the analysis of post-translational modification sites.
PTM databases
Protein interaction analysis
Protein interaction databases
Protein physicochemical analysis
Protein physicochemical databases
Protein sequence analysis
Find and compare bioinformatics tools for the analyzing protein sequences. Software tools and databases are ranked by the biomedical research community.
Protein sequence databases
