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CATNAP specifications

Information


Unique identifier OMICS_08799
Name CATNAP
Alternative name Compile, Analyze and Tally NAb Panels
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Karina Yusim <>

Publication for Compile, Analyze and Tally NAb Panels

CATNAP in publications

 (5)
PMCID: 5908066
PMID: 29672607
DOI: 10.1371/journal.ppat.1006944

[…] next calculated the geometric means of both the breadth and potency of the panel of bnabs against the infant t/f viruses and compared with their potency against other hiv variants as documented in catnap (compile, analyze and tally nab panels) [], the los alamos national laboratory (lanl) interface that collects all published immunological data. in general, potency and breadth of the bnabs […]

PMCID: 5789945
PMID: 29311326
DOI: 10.1073/pnas.1717765115

[…] viruses., at the identified set of residues, we further classify specific amino acid mutations as either “observed,” defined as those mutations associated with a change in binding to bnabs in the catnap data and observed in the msa, or “unobserved,” defined as mutations that are not in the catnap data (irrespective of whether they are observed in the msa). we found that roughly 90% […]

PMCID: 5669501
PMID: 29065122
DOI: 10.1371/journal.pcbi.1005789

[…] due to warnings regarding the alignment quality and due to warnings regarding the v3 loop quality (alignment score ≥ 95th percentile)., for this analysis, we used all available sequences from the catnap tool [], retrieved on 2016-08-10. since we used a neutralization sensitivity cutoff of 50 μg/ml to determine resistance and susceptibility, all sequences, whose neutralization sensitivity […]

PMCID: 5599761
PMID: 28747500
DOI: 10.1128/JVI.00991-17

[…] are under way is infeasible., we also compared bnab neutralization titers from viruses in each panel and summarized neutralization data for the 2006 clade c panel () and the global panel () from the catnap database (). for the previously published panels, we extracted data available from catnap as of may 2017 (http://hiv.lanl.gov/catnap). data from envs with multiple published results […]

PMCID: 5147934
PMID: 27936047
DOI: 10.1371/journal.pone.0167690

[…] subtyping tool [] and confirmed using neighbor-joining phylogenetic trees from the env region. we also used the programs variable region characteristics, n-linked glycosylation sites (pnlg) [], and catnap (compile, analyze and tally nab panels) []. for the analysis of hiv-1-specific signatures, vespa (viral epidemiology signature pattern analysis) was used. all programs were available […]


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CATNAP institution(s)
Los Alamos National Laboratory, Los Alamos, NM, USA
CATNAP funding source(s)
National Institutes of Health (NIH) [contract AGRAAI1200700101000 HIV/SIV, Database and Analysis Unit and grant HIVRAD P01 AI100148]; Bill & Melinda Gates Foundation [Collaboration for AIDS Vaccine Discovery, grant 1032144 and grant 1040753]

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