Dataset features

Specifications


Application: ChIP-seq analysis, RNA-seq analysis
Number of samples: 20
Release date: Dec 15 2013
Last update date: Aug 14 2018
Access: Public
Chemicals: Nucleotides
Dataset link Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana

Experimental Protocol


Chromatin accessibility profiling (Dnase I-seq) and RNA-seq of 7-day-old dark-grown seedlings exposed to 0hr light, 30min light, 3hr light or 24hr LD conditions. Chromatin accessibility profiling (Dnase I-seq) and RNA-seq of 7-day-old LD-grown seedlings treated with a brief sever heat shock or kept under control conditions. Replicates are included when available; controls and read-normalized samples (samples that were subsampled to the same read-depth) are also included here.

Repositories


GEO

GSE53322

ArrayExpress

E-GEOD-53322

ENA

SRP034154

BioProject

PRJNA231710

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Contact


John Stamatoyannopoulos
John A Stamatoyannopoulos