CBioC specifications


Unique identifier OMICS_30853
Name CBioC
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Database management system MySQL
Computer skills Medium
Stability Stable
Maintained Yes


No version available


  • person_outline Graciela Gonzalez
  • person_outline Chitta Baral

Publication for CBioC

CBioC citations


Enhancing navigation in biomedical databases by community voting and database driven text classification

BMC Bioinformatics
PMCID: 2768718
PMID: 19799796
DOI: 10.1186/1471-2105-10-317

[…] tation queue contains papers entered by experts or identified by text-mining methods. Other approaches extend established information retrieval systems by facilities that add a community context: The CBioC project, for example, enables community annotation of molecular interaction data [] by providing a browser plugin that opens a window when the user visits PubMed. Automated text extraction is us […]


Identifying gene disease associations using centrality on a literature mined gene interaction network

PMCID: 2718658
PMID: 18586725
DOI: 10.1093/bioinformatics/btn182

[…] the seed genes. A total of 19 of the top scoring genes are seed and only one is a non-seed (inferred) gene. Gonzalez et al. () started with a list of seed genes obtained from the automatically mined CBioC database and created an interaction network by extracting the interactions of the seed genes from the CBioC database (Baral et al., ) and curated databases such as BIND (Bader et al., ) and MINT […]

CBioC institution(s)
School of Computing and Informatics, Arizona State University, Tempe, AZ, USA; Northeast Biosciences, Inc, New York, NY, USA

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