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CC-PROMISE specifications

Information


Unique identifier OMICS_26986
Name CC-PROMISE
Alternative names canonical correlation and projection onto the most interesting evidence, CCPROMISE
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.6.0
Stability Stable
Requirements
methods, stats, Biobase, utils, R(>=3.3.0), GSEABase, CCP, PROMISE
Maintained Yes

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Maintainers


  • person_outline Stanley Pounds
  • person_outline Xueyuan Cao

Publication for canonical correlation and projection onto the most interesting evidence

CC-PROMISE citations

 (2)
library_books

Proceedings of the 2016 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference

2016
BMC Bioinformatics
PMCID: 5073803
PMID: 27766933
DOI: 10.1186/s12859-016-1213-4

[…] networks using a markov random walk model. the proposed approach was evaluated using multiple ppi networks and was found to be accurate and low at computational cost., xueyuan cao et al. describe cc-promise, a method to integrate any two forms of quantitative high-dimensional molecular data such as genotype, copy number, methylation, mrna expression, mirna expression, etc., with multiple […]

library_books

Proceedings of the 15th Annual UT KBRIN Bioinformatics Summit 2016

2016
BMC Bioinformatics
PMCID: 5001208
PMID: 28166713
DOI: 10.1186/s12859-016-1154-y

[…] proceedings of the fifteenth annual ut- kbrin bioinformatics summit 2016, eric c. rouchka, julia h. chariker, benjamin j. harrison, juw won park, p1 cc-promise: projection onto the most interesting statistical evidence (promise) with canonical correlation to integrate gene expression and methylation data with multiple pharmacologic and clinical […]


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CC-PROMISE institution(s)
Department of Biostatistics, St. Jude Children’s Research Hospital, Memphis, TN, USA; Department of Pharmaceutical Sciences, St. Jude Children’s Research Hospital, Memphis, TN, USA; Department of Pathology, St. Jude Children’s Research Hospital, Memphis, TN, USA; Department of Pharmacotherapy and Translational Research, University of Florida, Gainesville, FL, USA
CC-PROMISE funding source(s)
Supported by ALSAC and NIH grant R01-CA132946.

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