Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 12
Release date: May 7 2015
Last update date: Aug 9 2018
Access: Public
Diseases: Hepatitis C
Computational protocol: BWA, biobambam, IGV
Dataset link Engineering of a promoterless anti-viral RNAi hairpin into an endogenous miRNA locus [mRNA]

Experimental Protocol


Four Huh7 cells lines at 3 different passages were analyzed. The reference cell line was Huh7 wild type cells (WT). The other three cell lines had an integration of an anti-HCV shmiRNA in the hcr locus and miR-122 intact (T2 31.3) or mutated (TS 30.20 and U6 20.16). RNA was extracted from three different passages.

Repositories


GEO

GSE68637

ArrayExpress

E-GEOD-68637

BioProject

PRJNA283283

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