CCAT protocols

CCAT specifications

Information


Unique identifier OMICS_00428
Name CCAT
Alternative name Control based ChIP-Seq Analysis Tools
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 3.0
Stability Stable
Maintained Yes

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Publication for Control based ChIP-Seq Analysis Tools

CCAT IN pipeline

2011
PMCID: 3273378
PMID: 22139358
DOI: 10.1038/emboj.2011.431

[…] of the bowtie short-read aligner (langmead, 2010). redundant reads were removed, and those from the two biological replicates were merged into a single data set. macs (zhang et al, 2008b) and ccat (xu et al, 2010) peak-finding programs were used to identify histone-modified regions by comparing both mbd3-null and parental samples to their respective input dna controls. macs was used […]

CCAT institution(s)
Computational & Mathematical Biology Group, Genome Institute of Singapore, Singapore; School of Computer Engineering, Nanyang Technological University, Singapore; Genome Technology & Biology Group, Genome Institute of Singapore, Singapore; School of Computing, National University of Singapore, Singapore; School of Biological Science, Nanyang Technological University, Singapore

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