ccfindR

Assists users with single-cell RNA-seq data analysis. ccfindR is a collection of tools for cancer processing. This application includes utilities for downstream analyses, including meta-gene identification, visualization, and construction of rank-based trees for cell clusters. It also offers functions to access and modify basis matrices or to build tree connecting clusters at different ranks.

ccfindR specifications

Desktop

Information

Unique identifier	OMICS_31001
Name	ccfindR
Alternative name	cancer clone FindeR
Software type	Package/Module
Interface	Command line interface
Restrictions to use	None
Operating system	Unix/Linux, Mac OS, Windows
Programming languages	R
License	GNU General Public License version 2.0
Computer skills	Advanced
Version	1.0.0
Stability	Stable
Requirements	stats, S4Vectors, BiocGenerics, utils, methods, Matrix, SummarizedExperiment, SingleCellExperiment, Rtsne, graphics, grDevices, gtools, RColorBrewer, ape
Maintained	Yes

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Versioning

No version available

Maintainer

Jun Woo

Additional information

https://bioconductor.org/packages/release/bioc/html/ccfindR.html https://rdrr.io/bioc/ccfindR/

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