Facilitates network analysis and gene annotation by (i) presenting co-expression networks with gene expression views in multiple dimensions (tissue-preferential and stress-differential expression profiling), (ii) establishing a comparative analysis between diploid and allotetraploid cotton, such as subnetwork features and histone modifications of genes, and (iii) using functional enrichment tools, such as functional co-expression modules and gene set analyses. The ccNET database aims to provide an online database server for comparative gene functional analyses at a multidimensional network and epigenomic level across diploid and polyploid Gossypium species.
State key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China; State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agriculture Sciences (CAAS), Anyang, Henan, China; Department of Cell & Systems Biology, Centre for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, ON, Canada
ccNET funding source(s)
Ministry of Science and Technology of China [31571360, 31371291, U1303282 and 31171276]