CCP4 pipeline

CCP4 specifications

Information


Unique identifier OMICS_13635
Name CCP4
Alternative name Collaborative Computational Project 4
Software type Toolkit/Suite
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages C, C++, Fortran, Python
Computer skills Medium
Version 6.5
Stability Stable
Source code URL http://www.ccp4.ac.uk/download/#os=src
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Collaborative_Computational_Project_Number_4

Subtools


  • AUSPEX
  • PEAKMAX
  • SORTWATER
  • SFALL
  • PHASER
  • Aimless
  • SCALA

Download


Versioning


Add your version

Documentation


Maintainer


  • person_outline Martyn D. Winn <>

Publications for Collaborative Computational Project 4

CCP4 citations

 (27)
2018
PMCID: 5919072

[…] as described in [12, 23]. the data collection statistics are shown in table 1., crystal structure of pfmdh was initially solved by molecular replacement using balbes software [43] within the ccp4 suite [44] using the data collected on x13 beamline (embl, hamburg). the pdb model of cryptosporidium parvum mdh (2hjr) [27] was used as a search model [28], yielding a clear solution for 16 […]

2018
PMCID: 5947778

[…] results (for example multiple molecular models in automatic mr pipelines), they are presented through a navigation tree replicating the structure of the actual working directory., at present, ccp4 web services contain eight applications: three automatic molecular-replacement pipelines (balbes, mrbump and morda), two experimental phasing pipelines [crank2 (skubák & pannu, 2013 ▸) […]

2017
PMCID: 5663709

[…] detector. diffraction data were processed and scaled to 3.35 å resolution using hkl-200044., the ha1/s40-fab complex crystal structure was determined by molecular replacement using molrep from the ccp4 suite45 with the igg1 domain fragments (pdb entry 3w9d and 3hc4) and the ha1 fragment (pdb entry 3gbn) as the search models. the ha/s40-fab complex crystals belong to space group c2, with two […]

2016
PMCID: 4979206

[…] coefficient was estimated to be 2.53 å3 da−1 and solvent content was 51.3%32, suggesting that there was one molecule in asymmetric unit. molecular replacement was carried out using molrep33 of ccp4 program suite and the crystal structure of osd14 (pdb id 3vxk) as a template. buccaneer34 was applied for automatic model building. refinement was performed using refmac535 and wincoot36 […]

2016
PMCID: 4968834

[…] and oscillation range of 0.5°. seven hundred twenty images were collected using mar300 ccd detector and processed using hkl2000 [24]. all crystallographic calculations were carried out using the ccp4 software suite (version 6.5) [25]. the molecular replacement procedure was carried out using molrep [26]. structure refinement was performed using refmac5 and model adjustments were carried […]

CCP4 institution(s)
STFC Daresbury Laboratory, Daresbury, Warrington, UK; STFC Rutherford Appleton Laboratory, Chilton, Didcot, UK; York Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York, UK; Department of Biochemistry, University of Oxford, South Parks Road, Oxford, UK; MRC Laboratory of Molecular Biology, Hills Road, Cambridge, UK; University of Cambridge Department of Haematology, Cambridge Institute for Medical Research, Hills Road, Cambridge, UK; Biophysical Structural Chemistry, Leiden University, Leiden, Netherlands
CCP4 funding source(s)
This work is supported by the BBSRC through grant BB/F0202281and partly by Wellcome Trust Grant No. 064405/Z/01/A, by the Netherlandse Organisatie voor Wetenschappelijk Onderzoek (NWO) grant No. 700.55.425.

CCP4 reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review CCP4