CCTOP pipeline

CCTOP specifications

Information


Unique identifier OMICS_09207
Name CCTOP
Alternative name Consensus Constrained TOPology prediction
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Gábor E. Tusnády <>

Information


Unique identifier OMICS_09207
Name CCTOP
Alternative name Consensus Constrained TOPology prediction
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Gábor E. Tusnády <>

Publication for Consensus Constrained TOPology prediction

CCTOP IN pipelines

 (2)
2018
PMCID: 5790919
PMID: 29382737
DOI: 10.1128/mBio.02319-17

[…] program (http://www.phylogeny.fr/index.cgi) with default settings (62, 63). the putative protein topology of uut1 was predicted using the constrained consensus topology prediction server (cctop; institute of enzymology, budapest, hungary) (64, 65) and visualized using protter (http://wlab.ethz.ch/protter/start/) (66). the predicted endoplasmic reticulum (er) localization signal […]

2018
PMCID: 5794978
PMID: 29391531
DOI: 10.1038/s41598-018-20517-8

[…] site prediction server using the standardized data set of d. melanogaster genes28. membrane topology of acpr-i, ii, and iii were predicted using the constrained consensus topology prediction server (cctop)29. the deduced aedaeacpr-i, ii and iii protein sequences were aligned to the human gonadotropin-releasing hormone receptor 1 along with acp, akh, and crzr receptors from other species (see […]

CCTOP institution(s)
‘Momentum’ Membrane Protein Bioinformatics Research Group, Institute of Enzymology, RCNS, HAS, Budapest, Hungary

CCTOP review

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aquaq

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Desktop
Nice program for predicting transmembrane topology.