CCTop specifications

Information


Unique identifier OMICS_12279
Name CCTop
Alternative name CRISPR/Cas9 target online predictor
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Sequence of nucleotides
Input format (Multi)fasta file
Output data The sequence of the target sites, their coordinates and their detailed information
Output format .fasta, .bed and .xls
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements Bowtie 1, bx-Python
Maintained Yes

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Documentation


Maintainer


  • person_outline Juan L. Mateo <>

Information


Unique identifier OMICS_12279
Name CCTop
Alternative name CRISPR/Cas9 target online predictor
Interface Web user interface
Restrictions to use None
Input data Sequence of nucleotides
Input format Either single query or batch search (FASTA)
Programming languages Python
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Juan L. Mateo <>

Publication for CRISPR/Cas9 target online predictor

CCTop institution(s)
Centre for Organismal Studies, Heidelberg University, Heidelberg, Germany
CCTop funding source(s)
Supported by the European Research Council and the German Research Foundation (DFG: SFB873)

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