CD-HIT-OTU specifications

Unique identifier:
OMICS_01441
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable
Software type:
Pipeline/Workflow
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes

versioning

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CD-HIT-OTU distribution

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CD-HIT-OTU specifications

Unique identifier:
OMICS_01441
Restrictions to use:
None
Input format:
FASTA
Stability:
Stable
Interface:
Web user interface
Input data:
454 rRNA FASTA file with primer included.
Computer skills:
Basic
Maintained:
Yes

CD-HIT-OTU support

Maintainers

  • Weizhong Li <>
  • Sitao Wu <>
  • Weizhong Li <>
  • Sitao Wu <>

Additional information

Two versions are available, to analyse 454 and Illumina reads. User Guide: http://weizhong-lab.ucsd.edu/cd-hit-otu/wiki/doku.php?id=cd-hit-otu_user_guide

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Credits

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Publications

Institution(s)

Center for Research in Biological Systems, University of California San Diego, USA

Funding source(s)

Supported by National Institutes of Health [R01RR025030 and R01HG005978] and the Gordon and Betty Moore Foundation [CAMERA project].

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