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CDD specifications
Information
| Unique identifier | OMICS_04519 |
|---|---|
| Name | CDD |
| Alternative name | Conserved Domain Database |
| Restrictions to use | None |
| Community driven | No |
| Data access | Browse |
| User data submission | Not allowed |
| Version | 3.16 |
| Maintained | Yes |
| Wikipedia | https://en.wikipedia.org/wiki/Conserved_Domain_Database |
Maintainer
- person_outline Aron Marchler-Bauer
Additional information
Publications for Conserved Domain Database
CDD: NCBI's conserved domain database
CDD citations
(813)Heterologous expression of ZjOMT from Zoysia japonica in Escherichia coli confers aluminum resistance through melatonin production
[…] CR product was cloned into the pGEM-T (Promega, USA) and subsequently sequenced.CDS was predicted by DNAMAN 7 software (Lynnon Corporation). The domain of the deduced ZjOMT protein was analyzed using Conserved Domain Database (CDD) (https://www.ncbi.nlm.nih.gov/cdd). The theoretical pI and molecular weight were predicted by the ProtParam online software (http://web.expasy.org/protparam). […]
Molecular Characterization of SQUAMOSA PROMOTER BINDING PROTEIN LIKE (SPL) Gene Family in Betula luminifera
[…] onding genomic sequences using the Gene Structure Display Sever 2 (Hu et al., ; http://gsds.cbi.pku.edu.cn/). Conserved domains of BlSPLs were identified using Pfam (http://pfam.sanger.ac.uk) and the Conserved Domain Database (CDD, http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi) with the expected E-value threshold of 0.01 and the maximum hits of 500 amino acids (Zhang et al., ). Sequence logo […]
The orphan germinant receptor protein GerXAO (but not GerX3b) is essential for L alanine induced germination in Clostridium botulinum Group II
[…] d MEGA version 6.0 and used for generation of phylogenetic trees using the Neighbour Joining option. Figtree was used for annotation of phylogenetic trees. Conserved domains were identified using the Conserved Domain Database (NCBI). […]
High Diversity of Myocyanophage in Various Aquatic Environments Revealed by High Throughput Sequencing of Major Capsid Protein Gene With a New Set of Primers
[…] construct a tree using FastTree (). Representative sequences were checked by translating into amino acid sequences with CLC Sequence Viewer 7, and further confirmed by protein annotation with NCBI’s Conserved Domain Database (). An amino acid sequence-based maximum-likelihood tree was constructed to display the phylogenetic relations between these dominant representative sequences (representing t […]
The LetA/S two component system regulates transcriptomic changes that are essential for the culturability of Legionella pneumophila in water
[…] NCBI Conserved Domain Database (CDD https://www.ncbi.nlm.nih.gov/cdd/) was used to search for conserved protein domains that may be implicated in signal sensing within LetS. The Accession number YP_095929. […]
Two New Lytic Bacteriophages of the Myoviridae Family Against Carbapenem Resistant Acinetobacter baumannii
[…] ns/motif and additional function inference were detected using InterProScan (http://www.ebi.ac.uk/interpro/search/sequence-search) (Quevillon et al., ), HMMER (https://www.ebi.ac.uk/Tools/hmmer), and Conserved Domain Database (https://www.ncbi.nlm.nih.gov/cdd) (Marchlerbauer et al., ). The ExPASy server (http://us.expasy.org/tools/protparam.html) was used to predict molecular weight and isoelectri […]
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