CEA specifications


Unique identifier OMICS_09179
Name CEA
Alternative name Clique Enrichment Analysis
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Bing Zhang

Publication for Clique Enrichment Analysis

CEA citations


Pathway analysis and transcriptomics improve protein identification by shotgun proteomics from samples comprising small number of cells a benchmarking study

BMC Genomics
PMCID: 4290587
PMID: 25521637
DOI: 10.1186/1471-2164-15-S9-S1

[…] nvolved in metabolic and regulatory processes. Several methods for utilization of biological networks for improvement of identification (coverage) have been described, including analysis of overlaps, clique enrichment analysis, proteomics expansion pipeline, Maxlink, and shortest-path methods (reviewed in []). The improvement of inconsistencies between different runs can be pursued using overlap a […]


Comparative Network Based Recovery Analysis and Proteomic Profiling of Neurological Changes in Valproic Acid Treated Mice

J Proteome Res
PMCID: 3805323
PMID: 23557376
DOI: 10.1021/pr301127f

[…] ied clique provides reasonable evidence that a protein C, which is in the same clique as proteins A1, ..., An, should also be present in the sample. Examples of “cluster discovery” approaches include Clique Enrichment Analysis (CEA) and Proteomics Expansion Pipeline (PEP)., CEA identifies proteins belonging to a fully connected subgraph or clique. PEP follows a similar approach but uses a more rel […]

CEA institution(s)
Department of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, TN, USA; Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN, USA; Oak Ridge National Laboratory, Oak Ridge, TN, USA

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