Celera assembler protocols

Celera assembler specifications

Information


Unique identifier OMICS_00009
Name Celera assembler
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C, C++, Perl
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Gennady Denisov <>

Publication for Celera assembler

Celera assembler IN pipelines

 (18)
2017
PMCID: 5413918
PMID: 28446692
DOI: 10.1098/rspb.2016.2810

[…] teleost species and subjected to illumina hiseq sequencing (2 × 150 bp paired-end reads) which after trimming resulted in an overall coverage between 9 and 34×. the genomes were assembled using the celera assembler. for the phylogenetic reconstruction, nine reference fish species were added from ensembl together with salmo salar. an alignment of 71 418 bp was used as input for phylogenetic […]

2017
PMCID: 5597851
PMID: 28873966
DOI: 10.1093/gigascience/gix060

[…] the genome size from dna paired-end libraries. the estimated genome size is 805 mb, with the main peak observed at a coverage depth of ∼×39 (fig. 2). initial assemblies were performed using the celera assembler v. 8.3 (celera assembler, rrid:scr_010750) with trimmed paired-end reads [11]. for the celera assembler, paired-end read data were converted into frg file format using fastqtoca, […]

2017
PMCID: 5597851
PMID: 28873966
DOI: 10.1093/gigascience/gix060

[…] dna paired-end libraries. the estimated genome size is 805 mb, with the main peak observed at a coverage depth of ∼×39 (fig. 2). initial assemblies were performed using the celera assembler v. 8.3 (celera assembler, rrid:scr_010750) with trimmed paired-end reads [11]. for the celera assembler, paired-end read data were converted into frg file format using fastqtoca, which is a utility included […]

2017
PMCID: 5597851
PMID: 28873966
DOI: 10.1093/gigascience/gix060

[…] observed at a coverage depth of ∼×39 (fig. 2). initial assemblies were performed using the celera assembler v. 8.3 (celera assembler, rrid:scr_010750) with trimmed paired-end reads [11]. for the celera assembler, paired-end read data were converted into frg file format using fastqtoca, which is a utility included in the celera assembler. assembly was performed on an 80-processor workstation […]

2017
PMCID: 5597851
PMID: 28873966
DOI: 10.1093/gigascience/gix060

[…] assembler, rrid:scr_010750) with trimmed paired-end reads [11]. for the celera assembler, paired-end read data were converted into frg file format using fastqtoca, which is a utility included in the celera assembler. assembly was performed on an 80-processor workstation using intel xeon x7460 2.66 ghz processors and 1 tb of ram with the following parameters: overlapper = ovl, unitigger = bogart, […]

Celera assembler institution(s)
J Craig Venter Institute, Chinakville, MD, USA
Celera assembler funding source(s)
This work was supported by the J. Craig Venter Institute and by the National Institute of General Medical Sciences (R01 GM077117-01).

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