×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

Celera assembler

Identifies allelic variation given a Whole Genome Shotgun (WGS) assembly of haploid sequences. Celera assembler is an algorithm to produce a set of haploid consensus sequences rather than a single consensus sequence. It uses a dynamic windowing approach and detects alleles by simultaneously processing the portions of aligned reads spanning a region of sequence variation. Celera assembler also assigns reads to their respective alleles, phases adjacent variant alleles and generates a consensus sequence corresponding to each confirmed allele.

User report

×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Sort by:

1 user review

1 user review

mmoisse's avatar image

mmoisse

no longuer being maintained

Celera assembler forum

×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.

No open topic.

Celera assembler versioning

×
Upload and version your source code
Get your DOI for better tool traceability. Archive your releases so the community can easily visualize progress on you work.

No versioning.

Celera assembler classification

Celera assembler specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
C, C++, Perl
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable
Issue URL:
https://sourceforge.net/p/wgs-assembler/bugs/

Celera assembler support

Maintainer

  • Gennady Denisov <>

Credits

×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.

Publications

Institution(s)

J Craig Venter Institute, Chinakville, MD, USA

Funding source(s)

This work was supported by the J. Craig Venter Institute and by the National Institute of General Medical Sciences (R01 GM077117-01).

Link to literature

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.