Main logo
?
tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

Celera assembler

Identifies allelic variation given a Whole Genome Shotgun (WGS) assembly of haploid sequences. Celera assembler is an algorithm to produce a set of haploid consensus sequences rather than a single consensus sequence. It uses a dynamic windowing approach and detects alleles by simultaneously processing the portions of aligned reads spanning a region of sequence variation. Celera assembler also assigns reads to their respective alleles, phases adjacent variant alleles and generates a consensus sequence corresponding to each confirmed allele.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community
Sort by:

1 user review

1 user review

mmoisse's avatar image

mmoisse

no longuer being maintained

Celera assembler forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Celera assembler classification

Celera assembler specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
C, C++, Perl
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable

Celera assembler distribution

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

Celera assembler support

Documentation

Maintainer

  • Gennady Denisov <>

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

J Craig Venter Institute, Chinakville, MD, USA

Funding source(s)

This work was supported by the J. Craig Venter Institute and by the National Institute of General Medical Sciences (R01 GM077117-01).

Link to literature

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.