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Celera assembler

Identifies allelic variation given a Whole Genome Shotgun (WGS) assembly of haploid sequences. Celera assembler is an algorithm to produce a set of haploid consensus sequences rather than a single consensus sequence. It uses a dynamic windowing approach and detects alleles by simultaneously processing the portions of aligned reads spanning a region of sequence variation. Celera assembler also assigns reads to their respective alleles, phases adjacent variant alleles and generates a consensus sequence corresponding to each confirmed allele.

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mmoisse

no longuer being maintained

Celera assembler forum

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Celera assembler versioning

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Celera assembler classification

Celera assembler specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
C, C++, Perl
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable
Issue URL:
https://sourceforge.net/p/wgs-assembler/bugs/

Celera assembler support

Maintainer

  • Gennady Denisov < >

Credits

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Publications

Institution(s)

J Craig Venter Institute, Chinakville, MD, USA

Funding source(s)

This work was supported by the J. Craig Venter Institute and by the National Institute of General Medical Sciences (R01 GM077117-01).

Link to literature

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