caspo specifications

Unique identifier:
OMICS_13475
Software type:
Package/Module
Restrictions to use:
None
Input format:
SIF, JSON, MIDAS
Programming languages:
Python
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Name:
Cell ASP Optimizer
Interface:
Command line interface
Input data:
A prior knowledge network (PKN), an experimental setup, a phospho-proteomics dataset
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Version:
3.0.1
Requirements:
joblib, networkx, numpy, pandas, pydotplus, pyparsing, scikit-learn, scipy, seaborn

versioning

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caspo distribution

download

caspo support

Documentation

Maintainer

  • Santiago Videla <>

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Credits

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Publications

Institution(s)

LBSI, Fundacion Instituto Leloir (IIBBA-CONICET), Buenos Aires, Argentina; RWTH Aachen University, Faculty of Medicine, Joint Research Centre for Computational Biomedicine, Aachen, Germany; European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, UK; IRCCyN UMR CNRS 6597, Ecole Centrale de Nantes, France; CNRS, UMR 6074-IRISA, Rennes, France; Dyliss project, INRIA, Campus de Beaulieu, Rennes, France

Funding source(s)

Biotempo ANR-10-BLANC-0218 and TGFSysBio (ITMO Cancer, Plan Cancer 2014–2018)

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