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Handles large quantities of low contrast whole slides images using advanced cell detecting algorithms. The slideToolkit has been developed for modern personal computers and high-performance clusters. It provides a free, powerful and versatile collection of tools for automated feature analysis of whole slide images to create reproducible and meaningful phenotypic data sets. A workflow consists of four consecutive steps: (i) whole slide images are collected and converted to TIFF files; (ii) files are organized; (iii) creates multiple manageable tiles to count; (iv) tissue is analyzed and results are stored in a data set.
IHC Toolbox / Immunohistochemistry Toolbox
Detects the basic components in an Immunohistochemistry (IHC) image. IHC Toolbox was developed using a semi-automatic scheme that is suitable for different kinds of IHC image analysis. The software includes functions for semi-automatic color selection, automatic statistical color detection, automatic nuclei segmentation and automatic gland detection. It allows users to save and transfer their created models and parameters to different users for the reproduction of detection results in different laboratories.
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