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Cell-o-Tape specifications

Information


Unique identifier OMICS_26028
Name Cell-o-Tape
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
License BSD 3-clause “New” or “Revised” License
Computer skills Medium
Version 0.7.7
Stability Stable
Requirements
ImageJ or Fiji
Maintained Yes

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Versioning


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Maintainer


  • person_outline Andrew French

Publication for Cell-o-Tape

Cell-o-Tape citations

 (3)
library_books

The plant hormone ethylene restricts Arabidopsis growth via the epidermis

2018
Proc Natl Acad Sci U S A
PMCID: 5924893
PMID: 29643073
DOI: 10.1073/pnas.1717649115

[…] 6 d, the seedlings (12 per line) were stained with propidium iodide and imaged with a Nikon EZ-C1 confocal microscope. The cell lengths were analyzed on stitched pictures (Fiji software) by using the Cell-o-tape tool (). The position of each cell was calculated from the cumulative length of all cells lying between the measured cell and the QC. Then, the data were smoothened and interpolated into 2 […]

library_books

A SCARECROW based regulatory circuit controls Arabidopsis thaliana meristem size from the root endodermis

2016
PMCID: 4837209
PMID: 26848984
DOI: 10.1007/s00425-016-2471-0

[…] n, monitoring root meristem size after 24 h.Root meristem size was measured as the number of meristematic cortex cells using manual labeling at the optical microscope (see “”) rather than the program Cell-o-Tape (French et al. ). In fact, while automating and speeding up operations, this program does not take into account changes neither in the density of the cytoplasm nor in the vacuole size of d […]

library_books

Multi omics analysis identifies genes mediating the extension of cell walls in the Arabidopsis thaliana root elongation zone

2015
PMCID: 4335395
PMID: 25750913
DOI: 10.3389/fcell.2015.00010

[…] ilton-Keynes, UK). For cell quantification and cell length measurements, seedlings were treated with propidium iodide (10 μg ml−1; Sigma) to visualize cell walls. Cell lengths were measured using the Cell-o-Tape image-analysis tool (French et al., ). Data are presented as the mean ± the standard error and two-tail Student t-tests, used to determine significance (p-value < 0.05), were performed usi […]

Citations

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Cell-o-Tape institution(s)
Centre for Plant Integrative Biology, University of Nottingham, Sutton Bonington Campus, Nottingham, UK
Cell-o-Tape funding source(s)
Supported by EPSRC and BBSRC CISB programme.

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