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Number of citations per year for the bioinformatics software tool Cell-PLoc
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This map represents all the scientific publications referring to Cell-PLoc per scientific context
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Protocols

Cell-PLoc specifications

Information


Unique identifier OMICS_01617
Name Cell-PLoc
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for Cell-PLoc

Cell-PLoc citations

 (26)
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Potential molecular mechanisms of overgrazing induced dwarfism in sheepgrass (Leymus chinensis) analyzed using proteomic data

2018
BMC Plant Biol
PMCID: 5941328
PMID: 29739327
DOI: 10.1186/s12870-018-1304-7
call_split See protocol

[…] html) [] using the enrichment analysis tool Database for Annotation, Visualization and Integrated Discovery (DAVID) version 6.8 []. The subcellular localisation of the proteins was determined through Cell-PLoc 2.0, a package of web servers for predicting the subcellular localisation of proteins in various organisms []. […]

library_books

Modulation of Haemophilus influenzae interaction with hydrophobic molecules by the VacJ/MlaA lipoprotein impacts strongly on its interplay with the airways

2018
Sci Rep
PMCID: 5932069
PMID: 29720703
DOI: 10.1038/s41598-018-25232-y

[…] Subcellular location of the VacJ lipoprotein was predicted using the Cell-Ploc package (http://chou.med.harvard.edu/bioinf/Cell-PLoc/). VacJ characteristics were predicted with the PROTEAN program and proteomics tools from the ExPASy website. VacJ lipobox sequence was […]

library_books

The complete mitochondrial genome of the hermaphroditic freshwater mussel Anodonta cygnea (Bivalvia: Unionidae): in silico analyses of sex specific ORFs across order Unionoida

2018
BMC Genomics
PMCID: 5870820
PMID: 29587633
DOI: 10.1186/s12864-018-4583-3

[…] d time with the method set to exclude the possibility of TMs. Subcellular localizations (e.g. cell membrane, cytoplasm, nucleus, etc.) of H-ORFs were predicted using iLoc-Animal [] and Euk-mPLoc 2.0 (Cell-PLoc 2.0 package) []. M-ORFs and F-ORFs were also assessed for SPs and subcellular localization. Finally, all ORFs were assessed for signal cleavage sites (SCS) using Geneious [] and TargetP []. […]

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Depletion of Mageb16 induces differentiation of pluripotent stem cells predominantly into mesodermal derivatives

2017
Sci Rep
PMCID: 5660239
PMID: 29079788
DOI: 10.1038/s41598-017-14561-z

[…] iprot.org/uniprot/Q9CWV4), Mageb16 encodes for a protein of 363 amino acids (41 kDa). The molecular weight of MAGEB16 protein was verified using Western blotting methodology (Fig. ). According to the Cell-PLoc 2.0 bioinformatics tool for predicting subcellular localization of proteins in different organisms, MAGEB16 is predicted to be located in the cytosol. We confirmed this prediction using conf […]

library_books

Overexpression of NPR1 in Brassica juncea Confers Broad Spectrum Resistance to Fungal Pathogens

2017
Front Plant Sci
PMCID: 5632730
PMID: 29046679
DOI: 10.3389/fpls.2017.01693

[…] using Phyre2 server. Molecular weight and isoelectric point of BjNPR1 protein were obtained using Compute PI/MW tool of ExPASy. In silico subcellular localization of this protein was predicted using Cell-PLoc 2.0 program. […]

library_books

Modulation of Zinc Homeostasis in Acanthamoeba castellanii as a Possible Antifungal Strategy against Cryptococcus gattii

2017
Front Microbiol
PMCID: 5573748
PMID: 28883816
DOI: 10.3389/fmicb.2017.01626

[…] F02535) and Cation_efflux (PF01545), respectively. We applied an OrthoMCL analysis () to identify orthologs of amoeba zinc transporters in yeast and mouse. Cellular localization was predicted using a Cell-PLoc server ().Phylogenetic analysis was conducted using protein sequences aligned by Clustal Omega () using the default options. The best fitting model of amino acid substitution was evaluated u […]


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Cell-PLoc institution(s)
Gordon Life Science Institute, San Diego, CA, USA

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