Cell-PLoc protocols

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Cell-PLoc specifications

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Unique identifier OMICS_01617
Name Cell-PLoc
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for Cell-PLoc

Cell-PLoc in pipelines

 (2)
2017
PMCID: 5573748
PMID: 28883816
DOI: 10.3389/fmicb.2017.01626

[…] and cation_efflux (pf01545), respectively. we applied an orthomcl analysis () to identify orthologs of amoeba zinc transporters in yeast and mouse. cellular localization was predicted using a cell-ploc server ()., phylogenetic analysis was conducted using protein sequences aligned by clustal omega () using the default options. the best fitting model of amino acid substitution […]


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Cell-PLoc in publications

 (22)
PMCID: 5941328
PMID: 29739327
DOI: 10.1186/s12870-018-1304-7

[…] [] using the enrichment analysis tool database for annotation, visualization and integrated discovery (david) version 6.8 []. the subcellular localisation of the proteins was determined through cell-ploc 2.0, a package of web servers for predicting the subcellular localisation of proteins in various organisms []., the t-test method in limma package […]

PMCID: 5932069
PMID: 29720703
DOI: 10.1038/s41598-018-25232-y

[…] naturally transform nthi375δvacj and rdkw20δvacj strains. complemented strains were selected on sbhi agar with spec30 and erm11., subcellular location of the vacj lipoprotein was predicted using the cell-ploc package (http://chou.med.harvard.edu/bioinf/cell-ploc/). vacj characteristics were predicted with the protean program and proteomics tools from the expasy website. vacj lipobox sequence […]

PMCID: 5660239
PMID: 29079788
DOI: 10.1038/s41598-017-14561-z

[…] mageb16 encodes for a protein of 363 amino acids (41 kda). the molecular weight of mageb16 protein was verified using western blotting methodology (fig. ). according to the cell-ploc 2.0 bioinformatics tool for predicting subcellular localization of proteins in different organisms, mageb16 is predicted to be located in the cytosol. we confirmed this prediction using […]

PMCID: 5632730
PMID: 29046679
DOI: 10.3389/fpls.2017.01693

[…] using phyre2 server. molecular weight and isoelectric point of bjnpr1 protein were obtained using compute pi/mw tool of expasy. in silico subcellular localization of this protein was predicted using cell-ploc 2.0 program., to investigate the induction of bjnpr1 gene, 40 days old b. juncea plants were sprayed with 2 mm sa, 100 μm ja and 50 μm abscisic acid (aba) individually. control plants […]

PMCID: 5573748
PMID: 28883816
DOI: 10.3389/fmicb.2017.01626

[…] and cation_efflux (pf01545), respectively. we applied an orthomcl analysis () to identify orthologs of amoeba zinc transporters in yeast and mouse. cellular localization was predicted using a cell-ploc server ()., phylogenetic analysis was conducted using protein sequences aligned by clustal omega () using the default options. the best fitting model of amino acid substitution […]


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Cell-PLoc institution(s)
Gordon Life Science Institute, San Diego, CA, USA

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