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Cell tracking | Bioimaging software tools

Cell motility is a critical part of many important biological processes. Automated and sensitive cell tracking is essential to cell motility studies where the tracking results can be used for diagnostic or curative decisions and where mathematical…
Icy
Desktop

Icy

A collaborative bioimage informatics platform that combines a community website…

A collaborative bioimage informatics platform that combines a community website for contributing and sharing tools and material, and software with a high-end visual programming framework for seamless…

ADAPT
Desktop

ADAPT Automated Detection and Analysis of ProTrusions

Analyzes and detects cell migration and morphodynamics. ADAPT permits rapid…

Analyzes and detects cell migration and morphodynamics. ADAPT permits rapid whole-cell analysis of time-lapse videos, providing data on cell morphology, membrane velocity, and temporal changes in any…

CellStar
Desktop

CellStar

Permits analysis of video microscopy data for long-term experiments. CellStar…

Permits analysis of video microscopy data for long-term experiments. CellStar has been designed to achieve good performance and was compared with six software solutions dedicated to yeast cell…

NucliTrack
Desktop

NucliTrack

Extracts data from fluorescently labelled cells or nuclei. NucliTrack is an…

Extracts data from fluorescently labelled cells or nuclei. NucliTrack is an easy to use and open-source package that allows users to quickly inspect and correct tracking data. Results are…

CellTracker
Desktop

CellTracker

A user-friendly opensource software tool for tracking cells imaged with various…

A user-friendly opensource software tool for tracking cells imaged with various imaging modalities, including fluorescent, phase contrast, and differential interference contrast (DIC) techniques. The…

Whisk
Desktop

Whisk

Permits to track a single row of whiskers in a fully automated fashion. Whisk…

Permits to track a single row of whiskers in a fully automated fashion. Whisk is a cross-platform package for fully automated tracking of single rows of whiskers in high-speed video. It consists of a…

TRACMIT
Desktop

TRACMIT TRACking and analyzing cells on micropatterns through MITosis

Allows image analysis. TRACMIT permits to automate the chromatin feature…

Allows image analysis. TRACMIT permits to automate the chromatin feature extraction of mitotic cells grown on micropatterns. It allows screening of live imaging data sets for novel candidates…

MOPSA
Desktop

MOPSA Microfluidic-Optimized Particle Simulation Algorithm

Simulates lifelike trajectories for some particles. MOPSA is a…

Simulates lifelike trajectories for some particles. MOPSA is a microfluidics-optimized particle simulation algorithm that can treat particle as a 2D rigid circular object instead of a single point…

DISCO
Desktop

DISCO Data Informed Segmentation of Cell Objects

Segments and tracks budding yeast cells. DISCO is a comprehensive framework…

Segments and tracks budding yeast cells. DISCO is a comprehensive framework structured into several stages for integrated identification, segmentation and tracking of cells: (i) identification of…

MORE software analysis
Desktop

MORE software analysis morpho-rheological software analysis

Allows high-throughput single cell morpho-rheological (MORE) characterization…

Allows high-throughput single cell morpho-rheological (MORE) characterization of all major blood cells in continuous flow. MORE software analysis allows individual blood cell mechanics to be studied…

MotIW
Desktop

MotIW Motility study Integrated Workflow

A generic workflow for the study of single cell motility in high-throughput…

A generic workflow for the study of single cell motility in high-throughput time-lapse screening data. MotIW is composed of cell tracking, cell trajectory mapping to an original feature space and hit…

livespin
Desktop

livespin

A high throughput method to automatically detect the transition of a cell…

A high throughput method to automatically detect the transition of a cell cluster from two to three cells in thousands of videos. livespin performs a robust implicit tracking of cells even when they…

CellProfiler
Desktop

CellProfiler

A free, open-source system designed for flexible, high-throughput cell image…

A free, open-source system designed for flexible, high-throughput cell image analysis. CellProfiler can address a variety of biological questions quantitatively, including standard assays (for…

StarryNite
Desktop

StarryNite

An image analysis tool for automatically tracking fluorescently-labelled nuclei…

An image analysis tool for automatically tracking fluorescently-labelled nuclei during C. elegans embryogenesis.

OpenCFU
Desktop

OpenCFU

Enumerates clustered circular objects such as bacterial colonies. OpenCFU can…

Enumerates clustered circular objects such as bacterial colonies. OpenCFU can handle digital pictures as well as live stream from a video device/webcam. This software is cross-platform, fast,…

CellProfiler…
Desktop

CellProfiler Tracer

A free and open-source tool that complements the object tracking functionality…

A free and open-source tool that complements the object tracking functionality of the CellProfiler biological image analysis package. CellProfiler Tracer allows multi-parametric morphological data to…

Aivia
Desktop

Aivia

Combines state-of-the-art automated neuron tracing and machine learning-enabled…

Combines state-of-the-art automated neuron tracing and machine learning-enabled neuron classification tools. Aivia provides methods for analyzing time-lapse images. It covers a wide range of…

CellTrack
Desktop

CellTrack

A self-contained, extensible, and cross-platform software package for cell…

A self-contained, extensible, and cross-platform software package for cell tracking and motility analysis.

BactImAS
Desktop

BactImAS

A modular, multi-platform, open-source, Java-based software delivered both as a…

A modular, multi-platform, open-source, Java-based software delivered both as a standalone program and as a plugin for Icy. The software is designed for extracting and visualizing quantitative data…

DiaTrack
Desktop

DiaTrack

Benchmark object tracking software for 2D and 3D applications, such as…

Benchmark object tracking software for 2D and 3D applications, such as biological imaging, rheology, or single molecule imaging. DiaTrack provides a compelling set of tools to extract quantitative…

ImarisTrack
Desktop

ImarisTrack

A live cell imaging, tracking & analysis software that rises to the…

A live cell imaging, tracking & analysis software that rises to the challenge of monitoring temporal changes in biological systems (2D and 3D images over time). ImarisTrack is based on a choice…

Quimp
Desktop

Quimp

A method to correlate local cortical fluorescence with membrane movement. It…

A method to correlate local cortical fluorescence with membrane movement. It has a completely new semi-automated segmentation interface, a greatly improved boundary tracking method based on Richard…

TLA
Desktop

TLA Time Lapse Analyser

A free, cross-platform, open source software for high throughput time-lapse…

A free, cross-platform, open source software for high throughput time-lapse data processing for live cell imaging. TLA is a graphical tool which enables easy access to high-throughput live cell…

DcellIQ
Desktop

DcellIQ Dynamic Cell Image Quantitator

Aims to provide an automated pipeline for quantitative, reproducible and…

Aims to provide an automated pipeline for quantitative, reproducible and accurate interpretation of cell dynamic behaviors using time-lapse cellular images. DCellIQ is an automated tool with several…

LineageTracker
Desktop

LineageTracker

Offers an ImageJ based framework which is easily extendible and has the…

Offers an ImageJ based framework which is easily extendible and has the capability to track cell lineages while being specifically designed to handle large cell displacements between frames. The…

Image-Pro
Desktop

Image-Pro

Includes the latest tools for scientific and industrial image analysis and…

Includes the latest tools for scientific and industrial image analysis and image processing. Image-Pro offers 64-bit support, a user-friendly interface, intuitive macros and app building tools, new…

Volocity
Desktop

Volocity

Provides all the tools you need to visualize, analyze and validate 3D…

Provides all the tools you need to visualize, analyze and validate 3D fluorescence images from a wide range of confocal microscopy, widefield and high content screening systems and is fully…

MetaMorph
Desktop

MetaMorph

It is the ideal "glue" for easily integrating dissimilar fluorescent…

It is the ideal "glue" for easily integrating dissimilar fluorescent microscope hardware and peripherals into a single custom workstation, while providing all the tools needed to perform…

FARSIGHT
Desktop

FARSIGHT

It is an organized collection of software modules for image data handling,…

It is an organized collection of software modules for image data handling, pre-processing, segmentation, inspection and editing, post-processing, and secondary analysis. These modules can be scripted…

DYNAMIK
Desktop

DYNAMIK

Allows users to automatically segment and track cells in video sequences, plot…

Allows users to automatically segment and track cells in video sequences, plot their trajectories, and evaluate various cell parameters. The comparison with two other software packages showed that…

Braincells
Desktop

Braincells

A manual image analyzing program. The original purpose of Braincells was to…

A manual image analyzing program. The original purpose of Braincells was to follow cell and axon movements in image sequences.

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