Cell motility is a critical part of many important biological processes. Automated and sensitive cell tracking is essential to cell motility studies where the tracking results can be used for diagnostic or curative decisions and where mathematical models can be developed to deepen our understanding of the mechanisms underlying cell motility.
It is the ideal "glue" for easily integrating dissimilar fluorescent microscope hardware and peripherals into a single custom workstation, while providing all the tools needed to perform meaningful analysis of acquired images. The software offers many user-friendly application modules for biology-specific analysis such as cell signaling, cell counting, and protein expression.
Tracks intra- and inter-cellular phenomena. TrackMate simplifies the export and exchange of data and results with other tracking tools and/or analysis applications. It is useful for a wide range of tracking applications, ranging from single-particle tracking of subcellular organelles to cell lineage analysis. This tool can detect foci beyond what the human eye can distinguish via the quality threshold parameter.
A simple, user-friendly tool for interactive image classification, segmentation and analysis. It is built as a modular software framework, which currently has workflows for automated (supervised) pixel- and object-level classification, automated and semi-automated object tracking, semi-automated segmentation and object counting without detection. Most analysis operations are performed lazily, which enables targeted interactive processing of data subvolumes, followed by complete volume analysis in offline batch mode.
Benchmark object tracking software for 2D and 3D applications, such as biological imaging, rheology, or single molecule imaging. DiaTrack provides a compelling set of tools to extract quantitative information from image sequences.
It is based on the MultiTracker plugin by Jeffrey Kuhn which is based on the Object tracker plugin by Wayne Rasband. In contrast to the Multitracker plugin, the number of objects may vary between successive frames (objects may appear or disappear). Mtrack2 will identify the objects in each frame, and then determine which objects in successive frames are closest together. If these are within a user-defined distance (the maximum velocity of the objects) they are assembled into tracks. When multiple objects are within the distance determined by the maximum velocity, the closest object is selected and the object is flagged in the output.
Analyzes, processes and visualizes multi-dimensional microscopy images. BioImageXD puts open-source computer science tools for three-dimensional visualization and analysis into the hands of all researchers, through a user-friendly graphical interface tuned to the needs of biologists. BioImageXD has no restrictive licenses or undisclosed algorithms and enables publication of precise, reproducible and modifiable workflows. It allows simple construction of processing pipelines and should enable biologists to perform challenging analyses of complex processes.
It is an organized collection of software modules for image data handling, pre-processing, segmentation, inspection and editing, post-processing, and secondary analysis. These modules can be scripted to accomplish a variety of automated image analysis tasks.