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Cell Type enrichment CTen

Online

Determines if the observed gene regulation is the result of changes in the cellular make up of the sample. CTen can distinguish between active gene transcription and apparent gene expression resulting from differences in the numbers of select cell types in microarray data. CTen can be used in several other scenarios; for example, comparing excised tissue to ensure homogeneity between tissue samples.

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CTen classification

  • Animals
    • Homo sapiens
    • Mus musculus

CTen specifications

Interface:
Web user interface
Input data:
Gene list
License:
Other
Stability:
Stable
Restrictions to use:
None
Programming languages:
PHP, R
Computer skills:
Basic
Maintained:
Yes

CTen support

Maintainer

  • Jason Shoemaker <>

Credits

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Publications

Funding source(s)

This work was supported by the Japanese Science and Technology Agency's ERATO influenza induced host responses project.

Link to literature

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