CellAging statistics

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CellAging specifications

Information


Unique identifier OMICS_18693
Name CellAging
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Andre Ribeiro <>

Publication for CellAging

CellAging in publications

 (2)
PMCID: 5587725
PMID: 28878283
DOI: 10.1038/s41598-017-11257-2

[…] all images were acquired with nis-elements software (nikon)., data was analyzed using custom software written in matlab 2014a (mathworks). cells in phase contrast images were segmented using ‘cellaging’ (fig. ). alignment of the phase contrast images with the confocal images was done by selecting several landmarks in both images and using thin-plate spline interpolation […]

PMCID: 4909308
PMID: 27026687
DOI: 10.1093/dnares/dsw009

[…] temporally aligned using cross-correlation. next, an automatic segmentation of the cells was performed by mamle, which was checked and corrected manually. next, cell lineages were constructed by cellaging. alignment of the phase-contrast images with the confocal images was done by manually selecting 5–7 landmarks in both images, and using thin-plate spline interpolation for the registration […]


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CellAging institution(s)
Department of Signal Processing, Tampere University of Technology, Tampere, Finland; Department of Electrotechnical Engineering, Faculdade de Ciencias e Tecnologia, Universidade Nova de Lisboa, Lisboa, Portugal
CellAging funding source(s)
Supported d by Fundacao para a Ciencia e a Tecnologia of Portugal (ASR, JMF), TUT President Grant (ABM), Tampere City Science Foundation (AH), and Academy of Finland (ASR).

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