CellCognition Explorer statistics

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Citations per year

Citations chart

Popular tool citations

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Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

CellCognition Explorer specifications


Unique identifier OMICS_18359
Name CellCognition Explorer
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data Image data and center positions of all detected cell objects, together with a position mapping file indicating negative control positions used for randomly sampling cells for the training process.
Input format CellH5
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License GNU General Public License version 3.0
Computer skills Medium
Version 1.0
Stability Stable
Maintained Yes



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  • person_outline Daniel Gerlich <>

Publication for CellCognition Explorer

CellCognition Explorer institution(s)
Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna Biocenter (VBC), Vienna, Austria
CellCognition Explorer funding source(s)
Supported by the European Community’s Seventh Framework Programme FP7/2007-2013 under grant agreement no. 241548 (MitoSys) and no. 258068 (Systems Microscopy), an ERC Starting Grant under agreement no. 281198 (DIVIMAGE), and by the Austrian Science Fund (FWF) project no. SFB F34-06 (Chromosome Dynamics).

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