An HDF5 data format for cell-based assays in high-throughput microscopy, which stores high-dimensional image data along with inter-object relations in graphs. CellH5Browser, an interactive gallery image browser, demonstrates the versatility and performance of the file format on live imaging data of dividing human cells. CellH5 provides opportunities for integrated data analysis by multiple software platforms.
Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna, Austria; Institute of Biochemistry, Department of Biology Swiss Federal Institute of Technology (ETH Zurich), Zurich, Switzerland; Genome Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
CellH5 funding source(s)
The research leading to these results has received funding from the European Union's Seventh Framework Programme (FP7/2007-2013) under grant agreement nr. 241548 (Large-scale Integrating Project MitoSys), and under grant agreement nr. 258068 (EU-FP7-Systems Microscopy NoE).