CellHarmony specifications


Unique identifier OMICS_31752
Name CellHarmony
Software type Package/Module
Interface Command line interface
Restrictions to use None
Output data A final association z-score matrix derived from the Pearson correlation coefficients for all cells, an expression matrix in which each cell is placed adjacent to its best match, a query-only cell matrix with cells ordered and annotated according to the classification, and gene expression heatmaps of the expression matrices.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes




No version available


  • person_outline Nathan Salomonis
  • person_outline Erica DePasquale

Additional information


Publication for CellHarmony

CellHarmony institution(s)
Division of Biomedical Informatics, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, USA; Department of Pediatrics, University of Cincinnati School of Medicine, Cincinnati, OH, USA; Division of Immunobiology and Center for Systems Immunology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA; Division of Experimental Hematology and Cancer Biology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, USA; Department of Biomedical Informatics, University of Cincinnati, Cincinnati, OH, USA
CellHarmony funding source(s)
Supported by Cincinnati Children’s Hospital Research Foundation and funding from the National Institutes of Health R01 CA196658.

CellHarmony reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review CellHarmony