CellMaps statistics

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

CellMaps specifications

Information


Unique identifier OMICS_12260
Name CellMaps
Interface Web user interface, Application programming interface
Restrictions to use None
Input data Networks can be imported from local files in SIF, XLSX or text formats and exported in SVG or SIF formats. Pre-defined networks can also be imported from Reactome, KEGG or IntAct using CellBase web services. Attribute files containing metadata information about nodes and edges (e.g. gene expression, GO terms, etc.) can also be imported as simple tab-delimited matrices.
Programming languages C, Java, Javascript
Computer skills Basic
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Joaquín Dopazo <>

Publication for CellMaps

CellMaps in publication

PMCID: 4841025
PMID: 26946982
DOI: 10.3109/10253890.2016.1151491

[…] et al., , ). the current analysis only includes pathways in which more than six genes were directly measured. other pathways and sub-pathways were excluded. figures were generated using the cellmaps tool (http://cellmaps.babelomics.org/) in the babelomics platform (alonso et al., )., we previously reported the opposite metabolic phenotypes developed by subordinate and dominant mice […]


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CellMaps institution(s)
Computational Genomics Department, Centro de Investigación Príncipe Felipe (CIPF), Valencia, Spain; Bioinformatics of Rare Diseases (BIER), CIBER de Enfermedades Raras (CIBERER), Valencia, Spain; Computational Genomics Chair, Bull-CIPF, Valencia, Spain; Department of Medicine, University of Cambridge, School of Clinical Medicine, Addenbrooke's Hospital, Hills Road, Cambridge, UK; HPC Service, UIS, University of Cambridge, Cambridge, UK; Functional Genomics Node, (INB, PRB2, ISCIII) at CIPF, Valencia, Spain
CellMaps funding source(s)
This work is supported by grants BIO2014-57291-R from the Spanish Ministry of Economy and Competitiveness (MINECO), and Plataforma de Recursos Biomoleculares y Bioinformáticos PT 13/0001/0030 from the ISCIII, both co-funded with European Regional Development Funds (ERDF), PROMETEOII/2014/025 from the Conselleria de Educacio of the Valencian Community, and the Fundació la Marató TV3 [20133134].

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