CellML Model Repository statistics

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CellML Model Repository specifications


Unique identifier OMICS_08776
Name CellML Model Repository
Restrictions to use None
Maintained Yes

Publications for CellML Model Repository

CellML Model Repository citations


Challenges in horizontal model integration

BMC Syst Biol
PMCID: 4788958
PMID: 26968798
DOI: 10.1186/s12918-016-0266-3

[…] y efficient approach to obtain such models is to combine or integrate existing models. An ideal starting point are the continuously growing model databases, for example the BioModels Database [], the CellML Model Repository [] or the JWS Online - Model Database []. Thus model integration may potentially speed up the systems biology cycle of modeling and experimentation by re-using the data that wa […]


Combining computational models, semantic annotations and simulation experiments in a graph database

PMCID: 4352687
PMID: 25754863
DOI: 10.1093/database/bau130

[…] o search SBML, CellML and SED-ML files is available for testing. A prototype implementation is running as a search service on an instance of the Physiome Model Repository, which is the backend of the CellML Model Repository (http://staging.physiomeproject.org/). […]


PathCase SB: integrating data sources and providing tools for systems biology research

BMC Syst Biol
PMCID: 3410775
PMID: 22697505
DOI: 10.1186/1752-0509-6-67

[…] error. Visual model editing also gave an error “Element not found” when as a user, we tried to move or modify elements.The BMOND (Online Database) data is collected from SBML model repository [] and CellML model repository. It provides a static diagram, which cannot be zoomed. There are many exceptions after clicking a node.BioUML Workbench [] is a java-based client application. The program is do […]


Ranked retrieval of Computational Biology models

BMC Bioinformatics
PMCID: 2936397
PMID: 20701772
DOI: 10.1186/1471-2105-11-423

[…] ls of biological systems (bio-models) in standardised representation formats are available from different model repositories, including BioModels Database [], the JWS Online Model Database [], or the CellML Model Repository [].However, although getting more frequent, model reuse is not yet common-place. The reasons are similar to those hampering code reuse in computer science, where insufficient c […]


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CellML Model Repository institution(s)
Auckland Bioengineering Institute, The University of Auckland, Auckland, New Zealand
CellML Model Repository funding source(s)
Wellcome Trust; Maurice Wilkins Centre for Molecular Biodiscovery

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